View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9370_low_23 (Length: 317)
Name: NF9370_low_23
Description: NF9370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9370_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 28466277 - 28465996
Alignment:
| Q |
18 |
ggtgcaacatccctcatgcaagtaaacaagacctcttgcaatccccaggataatgtggactcgttggttccattctggttttaatggggtgaaaagaaag |
117 |
Q |
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| T |
28466277 |
ggtgcaacatccctcatgcaagtaaacaagacctcttgcaatccccaggataatgtggactcgttggttccaatctggttttaatggggtgaaaagaaag |
28466178 |
T |
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| Q |
118 |
ctcgctaaagtgccattactcatgaactcgtataccaaaatgcgatgttgtccctcattgcaatatccaagaagacgtacaagattcctatgaagagttt |
217 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| |
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| T |
28466177 |
ctcgctaaagtaccattactcatgaactcgtataccaaaatccgatgttgtccctcattgcagtatccaagaagacgaacaagattcctatgaagggttt |
28466078 |
T |
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| Q |
218 |
ggcctatcacactcatttcagtcttaaattccttatcactatcttggatcaacttatctagtttcttaactgccacattgat |
299 |
Q |
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| T |
28466077 |
gggctatcacactcatttcagtcttaaattccttatcactatcttgaatcaacttatctagtttcttaactgccacattgat |
28465996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 28445431 - 28445150
Alignment:
| Q |
18 |
ggtgcaacatccctcatgcaagtaaacaagacctcttgcaatccccaggataatgtggactcgttggttccattctggttttaatggggtgaaaagaaag |
117 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28445431 |
ggtgcaacacccctcgtgcaagtaaacaagacctcttgcaatccccaggataatgtggactcgttggttccaatctggttttaatggggtgaaaagaaag |
28445332 |
T |
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| Q |
118 |
ctcgctaaagtgccattactcatgaactcgtataccaaaatgcgatgttgtccctcattgcaatatccaagaagacgtacaagattcctatgaagagttt |
217 |
Q |
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| T |
28445331 |
ctagctaaagtgccattactcattaactcatatgccaaaatgcgatgctgtccttcgttgcaatatccaagaagacgaacaagattcctatgatgagttt |
28445232 |
T |
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| Q |
218 |
ggcctatcacactcatttcagtcttaaattccttatcactatcttggatcaacttatctagtttcttaactgccacattgat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28445231 |
ggcctatcacactcatttcagtcttaaattccttatcactatcttggatcaacttatctagtttcttaactgccacattgat |
28445150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 28488038 - 28487757
Alignment:
| Q |
18 |
ggtgcaacatccctcatgcaagtaaacaagacctcttgcaatccccaggataatgtggactcgttggttccattctggttttaatggggtgaaaagaaag |
117 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| | |||||||||||| |
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| T |
28488038 |
ggtgcaacatccctcgtgcaagtaaacaagacctcttgcaattcccaggataatgtggactcgttggttccaatttggttttaaagaagtgaaaagaaag |
28487939 |
T |
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| Q |
118 |
ctcgctaaagtgccattactcatgaactcgtataccaaaatgcgatgttgtccctcattgcaatatccaagaagacgtacaagattcctatgaagagttt |
217 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
28487938 |
ctcgctaaagttccattactcatgaactcgtataccaaaatccgatgttgtccctcattgcagtatccaagaagacgaacaagattcctatgaagagttt |
28487839 |
T |
|
| Q |
218 |
ggcctatcacactcatttcagtcttaaattccttatcactatcttggatcaacttatctagtttcttaactgccacattgat |
299 |
Q |
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| T |
28487838 |
gggctatcacactcatttcagtcttaaattccttatcactatcttgaatcaacttatctagtttcttaactgccacattgat |
28487757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 28437982 - 28437706
Alignment:
| Q |
18 |
ggtgcaacatccctcatgcaagtaaacaagacctcttgcaatccccaggataatgtggactcgttggttccattctggttttaatggggtgaaaagaaag |
117 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||| || | ||| || |||||||||||||| |||||| || || |||||||| ||| |
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| T |
28437982 |
ggtgcaacagtcctcatgcaagtaaataagacctcttgcaattccggtggcaatttgaactcgttggttccaacttggtttcaaaggagtgaaaaggaag |
28437883 |
T |
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| Q |
118 |
ctcgctaaagtgccattactcatgaactcgtataccaaaatgcgatgttgtccctcattgcaatatccaagaagacgtacaagattcctatgaagagttt |
217 |
Q |
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|| |||||||| ||||||||||| || || || |||||||| || ||||| | ||| ||||||| ||| ||||||| ||||||||||||||| |||||| |
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| T |
28437882 |
cttgctaaagtaccattactcatcaattcatacaccaaaatccggtgttgatcgtcactgcaatacccatgaagacgaacaagattcctatgatgagttt |
28437783 |
T |
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| Q |
218 |
ggcctatcacactcatttcagtcttaaattccttatcactatcttggatcaacttatctagtttcttaactgccaca |
294 |
Q |
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| ||||||| |||||||||| | ||||||||| ||||||||||| | |||||| || | ||||||||| |||||| |
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| T |
28437782 |
cgagtatcacattcatttcagtttgaaattccttgtcactatcttgaaacaacttgtccaatttcttaacggccaca |
28437706 |
T |
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