View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9370_low_28 (Length: 308)
Name: NF9370_low_28
Description: NF9370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9370_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 293
Target Start/End: Complemental strand, 5616129 - 5615846
Alignment:
| Q |
10 |
gcagagaagaaagaggaggggaccgtattcattgggaaaatgtctaatttgtggtgaatttagcagtagagtttggggaaaatatgagaatggacaaaat |
109 |
Q |
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| T |
5616129 |
gcagagaagaaagaggaggggaccgtattcattgggaaaatgtctaatttgtggtgaatttagcagtagagtttggggaaaatatgagaatggacaaaat |
5616030 |
T |
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| Q |
110 |
gaaaataggtatgcatttcagcttgtctctgcgatgatactataaaaaacaagagacaagtcagcaaggaaaattcattaccccaaaaatacttcttaag |
209 |
Q |
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| T |
5616029 |
gaaaataggtatgcatttcagcttgtctctgcgatgatactataaaaaacaagagacaagtcagcaaggaaaattcattaccccaaaaatacttcttaag |
5615930 |
T |
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| Q |
210 |
tcaaattcgggttaagagaccgttcatggcatggatttgttgtaccaggatttttcagttgtgtaaaagaacagtagtatgaag |
293 |
Q |
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| T |
5615929 |
tcaaattcgggtaaagagaccgctcatggcatggatttgttgtaccaggctttttcagttgtgtaaaagaacagtagtatgaag |
5615846 |
T |
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Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 293
Target Start/End: Complemental strand, 21161416 - 21161133
Alignment:
| Q |
10 |
gcagagaagaaagaggaggggaccgtattcattgggaaaatgtctaatttgtggtgaatttagcagtagagtttggggaaaatatgagaatggacaaaat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21161416 |
gcagagaagaaagaggaggggaccgtattcattgggaaaatgtctaatttgtggtgaatttagcagtagagtttggggaaaatatgagaatggacaaaat |
21161317 |
T |
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| Q |
110 |
gaaaataggtatgcatttcagcttgtctctgcgatgatactataaaaaacaagagacaagtcagcaaggaaaattcattaccccaaaaatacttcttaag |
209 |
Q |
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| T |
21161316 |
gaaaataggtatgcatttcagcttgtctctgcgatgatactataaaaaacaagagacaagtcagcaaggaaaattcattaccccaaaaatacttcttaag |
21161217 |
T |
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| Q |
210 |
tcaaattcgggttaagagaccgttcatggcatggatttgttgtaccaggatttttcagttgtgtaaaagaacagtagtatgaag |
293 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21161216 |
tcaaattcgggtaaagagaccgctcatggcatggatttgttgtaccaggctttttcagttgtgtaaaagaacagtagtatgaag |
21161133 |
T |
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