View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9370_low_3 (Length: 494)
Name: NF9370_low_3
Description: NF9370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9370_low_3 |
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| [»] scaffold0283 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 332
Target Start/End: Original strand, 10083047 - 10083362
Alignment:
| Q |
17 |
attatgatcatcatccctccaaacattataaagtgcaatgatgtttctgttcgtcatgcttctaagcaacctcacttcagagtaaagcctatcaatcatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| |
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| T |
10083047 |
attatgatcatcatccctccaaacattataaagtgcaatgatgtttctgttcgtcatgcttctaagtaatctcacttcagagtaaagtctatcaatcatt |
10083146 |
T |
|
| Q |
117 |
gcagggtcattgcagaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatcaaatgctctatacacttttttgcaagcacccg |
216 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10083147 |
gcagggtcattgctgaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatcaaatgctctataaacttttttgcaagcacccg |
10083246 |
T |
|
| Q |
217 |
atcctagtaactcgtcgtatcttccatatcttccggttggatcattttcaacaaatagttctgagtctttgtcggatggatttggtttaacacttggcat |
316 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10083247 |
atcctagtaactcgtcatatcttccatatcttccggttggatcattttcaacaaatagttctgagtctttgtcggatggatttggtttaacacttggcat |
10083346 |
T |
|
| Q |
317 |
ctagcaccaacatatg |
332 |
Q |
| |
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|||||||||||||||| |
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| T |
10083347 |
ctagcaccaacatatg |
10083362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 398 - 480
Target Start/End: Original strand, 10083428 - 10083510
Alignment:
| Q |
398 |
tctagacacttgtgatttttagagaataaaatcaattaaaaatgtttgacaatttatgtcgtgatgtcgaggtttttgatgtc |
480 |
Q |
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| T |
10083428 |
tctagacacttgtgatttttagagaataaaatcaattaaaaatgtttgacaatttatgtcgtgatgtcaaggtttttgatgtc |
10083510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 29 - 320
Target Start/End: Original strand, 22263857 - 22264148
Alignment:
| Q |
29 |
atccctccaaacattataaagtgcaatgatgtttctgttcgtcatgcttctaagcaacctcacttcagagtaaagcctatcaatcattgcagggtcattg |
128 |
Q |
| |
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||||||||||||||| |||||||||||||||||| |||| |||||| || |||| | ||||||||||||||||| || ||||||||||||||||||||| |
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| T |
22263857 |
atccctccaaacattgtaaagtgcaatgatgtttttgtttgtcatgtttttaagaagtctcacttcagagtaaagtctttcaatcattgcagggtcattg |
22263956 |
T |
|
| Q |
129 |
cagaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatcaaatgctctatacacttttttgcaagcacccgatcctagtaact |
228 |
Q |
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| |||||| | ||||||||||||||||| |||||||||||||||||||| | |||||||||| |||| |||||||| |||||||| | ||| ||||| | |
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| T |
22263957 |
ctgaaatttctgagcttaacttgattccatgctacttctattccttcttcattatcaaatgctttatagacttttttacaagcaccagctccaagtaatt |
22264056 |
T |
|
| Q |
229 |
cgtcgtatcttccatatcttccggttggatcattttcaacaaatagttctgagtctttgtcggatggatttggtttaacacttggcatctag |
320 |
Q |
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| T |
22264057 |
catcgtatcttccatatcttccagttggatcagtttcaacaaatgtttctgtgtctttgtcggatggattttgttgaacacttggcatctag |
22264148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 29 - 320
Target Start/End: Complemental strand, 22269983 - 22269692
Alignment:
| Q |
29 |
atccctccaaacattataaagtgcaatgatgtttctgttcgtcatgcttctaagcaacctcacttcagagtaaagcctatcaatcattgcagggtcattg |
128 |
Q |
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||||||||||||||| |||||||||||||||||| |||| |||||| || |||| | ||||||||||||||||| || ||||||||||||||||||||| |
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| T |
22269983 |
atccctccaaacattgtaaagtgcaatgatgtttttgtttgtcatgtttttaagaagtctcacttcagagtaaagtctttcaatcattgcagggtcattg |
22269884 |
T |
|
| Q |
129 |
cagaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatcaaatgctctatacacttttttgcaagcacccgatcctagtaact |
228 |
Q |
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| |||||| | ||||||||||||||||| |||||||||||||||||||| | |||||||||| |||| |||||||| |||||||| | ||| ||||| | |
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| T |
22269883 |
ctgaaatttctgagcttaacttgattccatgctacttctattccttcttcattatcaaatgctttatagacttttttacaagcaccagctccaagtaatt |
22269784 |
T |
|
| Q |
229 |
cgtcgtatcttccatatcttccggttggatcattttcaacaaatagttctgagtctttgtcggatggatttggtttaacacttggcatctag |
320 |
Q |
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| |||||||||||||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||| |
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| T |
22269783 |
catcgtatcttccatatcttccagttggatcagtttcaacaaatgtttctgtgtctttgtcggatggattttgttgaacacttggcatctag |
22269692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 45874415 - 45874720
Alignment:
| Q |
18 |
ttatgatcatcatccctccaaacattataaagtgcaatgatgtttctgttcgtcatgcttctaagcaacctcacttcagagtaaagcctatcaatcattg |
117 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||| |||||||||||| ||| |||||||||||||||| || ||||||||||||||||||| |||||||| |
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| T |
45874415 |
ttatgatcttcatctctccaaacatagtaaagggcaatgatgttttcgtttctcatgcttctaagcaatctaacttcagagtaaagcctatgaatcattg |
45874514 |
T |
|
| Q |
118 |
cagggtcattg---cagaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatcaaatgctctatacacttttttgcaagcacc |
214 |
Q |
| |
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|||||||||| | |||||| | || || ||||||||||| || |||||||||||||||||||||||||||||| | ||||||||||| |||| ||| |
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| T |
45874515 |
cagggtcattattactgaaatttctgagtttgacttgattccacgcaacttctattccttcttcttgatcaaatgctttgtacacttttttacaagaacc |
45874614 |
T |
|
| Q |
215 |
cgatcctagtaactcgtcgtatcttccatatcttccggttggatcattttcaacaaatagttctgagtctttgtcggatggatttggtttaacacttggc |
314 |
Q |
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||||| ||||| || | |||||| ||||||||||| ||||| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| | |
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| T |
45874615 |
tgatccaagtaattcattgtatctaccatatcttccagttgggtcagtttcaacaaatggttctgagtctttgtcgaatggatttggtttaacacttttc |
45874714 |
T |
|
| Q |
315 |
atctag |
320 |
Q |
| |
|
|||||| |
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| T |
45874715 |
atctag |
45874720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 41245821 - 41245997
Alignment:
| Q |
26 |
atcatccctccaaacattataaagtgcaatgatgtttctgttcgtcatgcttctaagcaacctcacttcagagtaaagcctatcaatcattgcagggtca |
125 |
Q |
| |
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|||||| ||||||||| |||||||| ||||||||||| |||| |||| |||||| | |||||||||||||| |||||||| || | ||| ||||| ||| |
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| T |
41245821 |
atcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaagcctctctaccatagcaggttca |
41245920 |
T |
|
| Q |
126 |
ttgcagaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatcaaatgctctatacacttt |
202 |
Q |
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| T |
41245921 |
tcacagaagtttcttagcttcacttggttccatgctacctctattccttcttcttgatcgaatgcacgatacacttt |
41245997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 42725065 - 42725004
Alignment:
| Q |
126 |
ttgcagaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatcaaa |
187 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| || ||||| |||||||||||||||||||| |
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|
| T |
42725065 |
ttgctgaaattccgaagtttaacttgattccatgcaacttcaattccttcttcttgatcaaa |
42725004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 19039 - 18978
Alignment:
| Q |
126 |
ttgcagaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatcaaa |
187 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| || ||||| |||||||||||||||||||| |
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|
| T |
19039 |
ttgctgaaattccgaagtttaacttgattccatgcaacttcaattccttcttcttgatcaaa |
18978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 47006360 - 47006414
Alignment:
| Q |
140 |
aagcttaacttgattccaagctacttctattccttcttcttgatcaaatgctcta |
194 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||||| | | ||||||||||||| |
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|
| T |
47006360 |
aagctttacttgattccatgctacttctattccttcatactcatcaaatgctcta |
47006414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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