View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9370_low_31 (Length: 296)
Name: NF9370_low_31
Description: NF9370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9370_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 55 - 254
Target Start/End: Original strand, 30440958 - 30441166
Alignment:
| Q |
55 |
ttttttgttgttaagaggcattgagcgtgtgaaatatttgtcatttacaatgttgagaggcattgagcgnnnnnnnattt------gcattggaacattt |
148 |
Q |
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| T |
30440958 |
tttttttttgttaagaggcattgagcgtgtgaaatatttgtcatttacaatgttaagaggcattgagcgtttttttttttttttttgcattggaacattt |
30441057 |
T |
|
| Q |
149 |
gtcatttacaatgttacttttaactttacatgggaactgctttat---acacacagttgcacaaccatataaatgtgcatggaaaatatacgcacgttta |
245 |
Q |
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| T |
30441058 |
gtcatttacaatgttacttttaactttacatgggaactgctttattatacacacagttgcacaaccatataaatgtgcatggaaaatatacgcacgttta |
30441157 |
T |
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| Q |
246 |
cagctttgc |
254 |
Q |
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| T |
30441158 |
cagctttgc |
30441166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 16961515 - 16961568
Alignment:
| Q |
145 |
atttgtcatttacaatgttacttttaactttacatgggaactgctttatacaca |
198 |
Q |
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| T |
16961515 |
atttgtcatttacaatgttacttttaactttacatgggaactgctttatacaca |
16961568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 25867528 - 25867475
Alignment:
| Q |
145 |
atttgtcatttacaatgttacttttaactttacatgggaactgctttatacaca |
198 |
Q |
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| T |
25867528 |
atttgtcatttacgatgttacttttaactttacatgggaactgctttatacaca |
25867475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 4091594 - 4091541
Alignment:
| Q |
145 |
atttgtcatttacaatgttacttttaactttacatgggaactgctttatacaca |
198 |
Q |
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| T |
4091594 |
atttgtcatttacaatgttatttttaactttacatgggaactgctttatacaca |
4091541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 47520998 - 47520945
Alignment:
| Q |
145 |
atttgtcatttacaatgttacttttaactttacatgggaactgctttatacaca |
198 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47520998 |
atttgtcatttacaatgttacttttaactttacatcggaactgctttatacaca |
47520945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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