View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9370_low_33 (Length: 293)
Name: NF9370_low_33
Description: NF9370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9370_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 2417756 - 2417482
Alignment:
| Q |
1 |
gagtaactgtatgatgtacactgtgttacttgtggtctttgtgtaggaaaaacttgtaatgttttgtagtttcaatattaggaaagtattgagattgaag |
100 |
Q |
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| T |
2417756 |
gagtaactgtatgatgtacactgtgttacttgtggtctttgtgtaggaaaaacttgtaatgttttgtagtttcaatattaggaaagtattgagattgaag |
2417657 |
T |
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| Q |
101 |
aaagaattgaattcagatgtgtatcagaattgaatgtgttgactgtggaaataagtatcagaaaatgcactgtgtaaaactttgaagctattagcagtag |
200 |
Q |
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| T |
2417656 |
aaagaattgaattcagatgtgtatcagaattgaatgtgttgactgtggaaataagtatcagaaaatgcactgtgtaaaactttgaagcttttaccattaa |
2417557 |
T |
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| Q |
201 |
aggtggctctggtccaggaagttatcaaccgttccaattagaaatggaaagtgaagccattcttctaatcattct |
275 |
Q |
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| T |
2417556 |
aggtggctctggtccaggaagttatcaaccgttccaattagaaatggaaagtgaagccatttttctaatcattct |
2417482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 149 - 275
Target Start/End: Original strand, 40141295 - 40141422
Alignment:
| Q |
149 |
aaataagtatcagaaaatgcactgtgtaaaactttgaagctattagcagtagaggtggctctggtccaggaagttatcaaccgttccaattagaaatgga |
248 |
Q |
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| T |
40141295 |
aaataaatatcagaaaatgcactggggaaaactttgaagctattagtagtagaggtggctctggtccaacaggttatcaaccgttcacattagaaatgga |
40141394 |
T |
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| Q |
249 |
aagtgaa-gccattcttctaatcattct |
275 |
Q |
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| T |
40141395 |
aagtaaacgccattcttctaatcattct |
40141422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 40027332 - 40027464
Alignment:
| Q |
15 |
tgtacactgtgttacttgtggtctttgtgt-----aggaaaaacttgtaatgttttgtagttt-caatattaggaaagtattgagattgaagaaagaatt |
108 |
Q |
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| T |
40027332 |
tgtacacaatgttacttgttgtctttgtgttaagtaggaaaaacttgcaatattttatagttttcaatattaggaaagtattgagattgaagaaagaatt |
40027431 |
T |
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| Q |
109 |
gaattcagatgtgtatcagaattgaatgtgttg |
141 |
Q |
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| T |
40027432 |
gaattcagatgtgtatcacaactgaatgggttg |
40027464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 40141147 - 40141241
Alignment:
| Q |
44 |
taggaaaaacttgtaatgttttgtagtttcaatattaggaaagtattgagattgaagaaagaattgaattcagatgtgtatcagaattgaatgtgttg |
141 |
Q |
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| T |
40141147 |
taggaaaaacttgcaatgttttgtagtttca---ttaaggaagtattgagattgaagaaagaattgaattcagatgtgtatcagaagtgtatgtgttg |
40141241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 47874120 - 47874172
Alignment:
| Q |
43 |
gtaggaaaaacttgtaatgttttgtagtttcaatattaggaaagtattgagat |
95 |
Q |
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| T |
47874120 |
gtaggaaaaacttgttatggtttgtagtttcaatattagacaagtattgagat |
47874172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 40027533 - 40027578
Alignment:
| Q |
166 |
tgcactgtgtaaaactttgaagctattagcagtagaggtggctctg |
211 |
Q |
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| T |
40027533 |
tgcactgtgcaaaattttgaagctagtagcagtagaggcggctctg |
40027578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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