View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9370_low_34 (Length: 287)
Name: NF9370_low_34
Description: NF9370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9370_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 11696686 - 11696962
Alignment:
| Q |
1 |
gcactcatttagggtctcctgatcttggaaagtgtatacacgggatcttgttgaggaacattagtgaactcaatgttgttgtgaagacttcgttaattga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11696686 |
gcactcatttagggtctcctgatcttggaaagtgtatacacgggatcttgttgaggaacattagtgaactcaatgttgttgtgaagacttcgttaattga |
11696785 |
T |
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| Q |
101 |
tatgtatgtcaagtgtggatgtcttgagaaaggtttacgcgtattcgagaatatgtcggagaagaatagattttcttacactgtaatgatatctggtctt |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11696786 |
tatgtatgtcaagagtggatgtcttgagaaaggtttacgcgtattcaaaaatatgtcggagaagaatagatattcttacactgtaatgatatctggtctt |
11696885 |
T |
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| Q |
201 |
gcgattcatggacgtggtaaggaagctcttaaagttttctcagaaatgattgaagaaggtttggcaccagatgatgt |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11696886 |
gcgattcatggacgtggtaaggaagctcttaaagttttctcagaaatgattgaagaaggtttggcaccagatgatgt |
11696962 |
T |
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