View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9370_low_38 (Length: 266)

Name: NF9370_low_38
Description: NF9370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9370_low_38
NF9370_low_38
[»] chr5 (2 HSPs)
chr5 (163-259)||(38472556-38472651)
chr5 (83-130)||(38472448-38472495)
[»] chr3 (1 HSPs)
chr3 (163-258)||(46017910-46018005)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 163 - 259
Target Start/End: Original strand, 38472556 - 38472651
Alignment:
Q  163 caggttcagagagagagaacaaatcttgaactgattttgactcaattgttgactccaccaatgacttctttcaatttcgatttagtcagtataatct 259  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38472556 caggttcagagagagaga-caaatcttgaactgattttgactcaattgttgactccaccaatgacttctttcaatttcgatttagtcagtacaatct 38472651  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 38472448 - 38472495
Alignment:
Q  83 aaaactatcccttcatcttgcatacacgagattcaattgacacaacta 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38472448 aaaactatcccttcatcttgcatacacgagattcaattgacacaacta 38472495  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 46017910 - 46018005
Alignment:
Q  163 caggttcagagagagagaacaaatcttgaactgattttgactcaattgttgactccaccaatgacttctttcaatttcgatttagtcagtataatc 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||| ||| ||||    
T  46017910 caggttcagagagagagaacaaatcttgaactgattttgactcaattgttgactccatcaatgacttcttccaattccgatttagtccgtacaatc 46018005  T

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