View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9370_low_43 (Length: 242)
Name: NF9370_low_43
Description: NF9370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9370_low_43 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 50 - 242
Target Start/End: Original strand, 43288470 - 43288662
Alignment:
| Q |
50 |
atttgtggatggagaaatgtataagaaattgactgaaagtgagcatgttaaagagaagcttatagattgtgttaaccggaaccagggagatagcgttcac |
149 |
Q |
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| T |
43288470 |
atttgtggatggagaaatgtataagaaattgactgaaagtgagcatgttaaagagaagcttatagattgtgttaaccggaaccagggagatagcgttcac |
43288569 |
T |
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| Q |
150 |
tgatgtcggtagaatattctaatatgtctatttcaattatggtatgaaagaatcagagcatggaaacctttgtaagttttaaacttttctccc |
242 |
Q |
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| T |
43288570 |
tgatgtcggtagaatattctaatatgtctatttcaattatggtatgaaagaatcagagcatggaaacctttgtaagttttaaacttttctccc |
43288662 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 31209829 - 31209759
Alignment:
| Q |
37 |
gctgctatgtcatatttgtggatggagaaatgtataagaaattgactgaaagtgagcatgttaaagagaagctt |
110 |
Q |
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| T |
31209829 |
gctgctatgtcatatctgtggatgga---atgtataagaaattggctgaaattaagcatgtcaaagagaagctt |
31209759 |
T |
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