View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9370_low_46 (Length: 241)
Name: NF9370_low_46
Description: NF9370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9370_low_46 |
 | |
|
| [»] scaffold0008 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0008 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 48 - 241
Target Start/End: Original strand, 64553 - 64738
Alignment:
| Q |
48 |
aacagatataacaaaagtggtataaagaaacacaaatgcctaacagacatctagacatcagcacaacctgacgcggggcatgaaaccagtttacaaagta |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||| || |
|
|
| T |
64553 |
aacagatataacaaaagtggtataaagaaacacaaatgcctaacagac--------atcagcacaacctaacgcggggcataaaaccagattacaaaata |
64644 |
T |
|
| Q |
148 |
aatgacgtgtaaaaggccgcaagcatcataacgaaccagaaacattaccgctaaccaaagtgattagtaaacggatacatcaactaaaaaatgc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
64645 |
aatgacgtgtaaaaggccgcaagcatcataacgaaccagagacattaccgctaaccaaagtgattagttaacggatacatcaactaaaaaatgc |
64738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University