View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9370_low_52 (Length: 217)

Name: NF9370_low_52
Description: NF9370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9370_low_52
NF9370_low_52
[»] chr8 (2 HSPs)
chr8 (25-204)||(25187802-25187988)
chr8 (94-195)||(4282246-4282348)
[»] chr2 (2 HSPs)
chr2 (38-187)||(19250969-19251118)
chr2 (70-171)||(25290643-25290744)
[»] chr3 (3 HSPs)
chr3 (70-197)||(9443534-9443661)
chr3 (69-163)||(744438-744532)
chr3 (70-163)||(748369-748462)
[»] chr6 (1 HSPs)
chr6 (99-197)||(7859317-7859415)
[»] chr5 (1 HSPs)
chr5 (94-197)||(28800938-28801041)
[»] chr4 (1 HSPs)
chr4 (138-198)||(19724282-19724342)
[»] scaffold0596 (1 HSPs)
scaffold0596 (94-171)||(2937-3014)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 25 - 204
Target Start/End: Original strand, 25187802 - 25187988
Alignment:
Q  25 cacaactgccatgtaactaacagccccaaaaataacaccgaaaggctatctaagtaagcattctcgggtgttcca-------acaccactcataatacaa 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  25187802 cacaactgccatgtaacgaacagccccaaaaataacaccgaaaggctatctaagtaagcattctcgggtgttccaacctccaacaccactcataatacaa 25187901  T
Q  118 gcacaatgctatttttaacttactcatactccaataccaagctaacatcttgatattatcgaccaattcctctatctcaagaataat 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25187902 gcacaatgctatttttaacttactcatactccaataccaagctaacatcttgatattatcgaccaattcctctatctcaagaataat 25187988  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 195
Target Start/End: Complemental strand, 4282348 - 4282246
Alignment:
Q  94 gttccaacaccactcataatacaagcacaatgctatttttaa-cttactcatactccaataccaagctaacatcttgatattatcgaccaattcctctat 192  Q
    |||||||||||||||||||||||| ||    ||||||||| | ||||||||||||||||||||||||||  | ||| ||||| |||||||  ||||| ||    
T  4282348 gttccaacaccactcataatacaaacatgtcgctatttttcagcttactcatactccaataccaagctagaacctttatattctcgaccacatcctccat 4282249  T
Q  193 ctc 195  Q
    |||    
T  4282248 ctc 4282246  T

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Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 38 - 187
Target Start/End: Original strand, 19250969 - 19251118
Alignment:
Q  38 taactaacagccccaaaaat-aacaccgaaaggctatctaagtaagcattctcgggtgttccaacaccactcataatacaagcacaatgctatttttaac 136  Q
    |||| ||||||||||| ||| |||||||||  ||||||||||||||||||  || | |||| ||||||||| ||||||||| |||| || | |||| |||    
T  19250969 taacaaacagccccaataatgaacaccgaattgctatctaagtaagcattaccgagggttctaacaccacttataatacaaacaca-tgatgttttcaac 19251067  T
Q  137 ttactcatactccaataccaagctaacatcttgatattatcgaccaattcc 187  Q
    ||||||||||||||| |||||| ||||| ||||||||||||||||||||||    
T  19251068 ttactcatactccaaaaccaagataacaccttgatattatcgaccaattcc 19251118  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 25290744 - 25290643
Alignment:
Q  70 ctatctaagtaagcattctcgggtgttccaacaccactcataatacaagcacaatgctatttttaacttactcatactccaataccaagctaacatcttg 169  Q
    ||||||||||||||| || || | |||||||| ||||||||||||||| ||| |  | ||||||||||||||||||||||||||||||||||  ||||||    
T  25290744 ctatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaacttactcatactccaataccaagctagaatcttg 25290645  T
Q  170 at 171  Q
    ||    
T  25290644 at 25290643  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 70 - 197
Target Start/End: Original strand, 9443534 - 9443661
Alignment:
Q  70 ctatctaagtaagcattctcgggtgttccaacaccactcataatacaagcacaatgctatttttaacttactcatactccaataccaagctaacatcttg 169  Q
    ||||| ||||||||| || || | ||||||||||||||||||| ||||||||   |||||||||| ||||||||||||||||||||||||||  | ||||    
T  9443534 ctatcgaagtaagcactcccgagggttccaacaccactcataagacaagcacgtcgctatttttagcttactcatactccaataccaagctaggaccttg 9443633  T
Q  170 atattatcgaccaattcctctatctcaa 197  Q
    ||||| || ||||||||||| |||||||    
T  9443634 atattctccaccaattcctccatctcaa 9443661  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 744438 - 744532
Alignment:
Q  69 gctatctaagtaagcattctcgggtgttccaacaccactcataatacaagcacaatgctatttttaacttactcatactccaataccaagctaac 163  Q
    ||||||||| |||| ||||||| | ||||||||||||||| |||||||| ||| || | |||||   | ||||||||| ||||||||||| ||||    
T  744438 gctatctaattaagtattctcgagggttccaacaccactcgtaatacaaacacgatacaattttccgcctactcatacaccaataccaagataac 744532  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 163
Target Start/End: Original strand, 748369 - 748462
Alignment:
Q  70 ctatctaagtaagcattctcgggtgttccaacaccactcataatacaagcacaatgctatttttaacttactcatactccaataccaagctaac 163  Q
    |||||||| |||| ||||||| | ||||||||||||||| |||||||| ||| || | |||||   | ||||||||  ||||||||||||||||    
T  748369 ctatctaattaagtattctcgagggttccaacaccactcgtaatacaaacacgatacaattttccgcctactcatataccaataccaagctaac 748462  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 7859415 - 7859317
Alignment:
Q  99 aacaccactcataatacaagcacaatgctatttttaacttactcatactccaataccaagctaacatcttgatattatcgaccaattcctctatctcaa 197  Q
    ||||||||||||||||||| |||   |||||| | | |||||||||||||||||||||||| |  | ||||||||| || ||||| |||||||||||||    
T  7859415 aacaccactcataatacaaacacgtcgctattatcagcttactcatactccaataccaagcaagaaccttgatattctccaccaaatcctctatctcaa 7859317  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 197
Target Start/End: Complemental strand, 28801041 - 28800938
Alignment:
Q  94 gttccaacaccactcataatacaagcacaatgctatttttaacttactcatactccaataccaagctaacatcttgatattatcgaccaattcctctatc 193  Q
    |||||||||||| ||||||||| | ||  |||||||||| |  || ||||||||||||||||||||||  | ||||||||| || ||||| ||||||| |    
T  28801041 gttccaacaccaatcataatacgaacatgatgctattttaagtttgctcatactccaataccaagctagaaccttgatattctccaccaaatcctctacc 28800942  T
Q  194 tcaa 197  Q
    ||||    
T  28800941 tcaa 28800938  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 19724282 - 19724342
Alignment:
Q  138 tactcatactccaataccaagctaacatcttgatattatcgaccaattcctctatctcaag 198  Q
    ||||||||||||||||||||||||||| ||||||||| || | |||||| |||| ||||||    
T  19724282 tactcatactccaataccaagctaacaccttgatattctcaatcaattcttctacctcaag 19724342  T

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Target: scaffold0596 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 171
Target Start/End: Original strand, 2937 - 3014
Alignment:
Q  94 gttccaacaccactcataatacaagcacaatgctatttttaacttactcatactccaataccaagctaacatcttgat 171  Q
    |||||||||| |||  ||| |||| ||| |||| ||||| |||  ||||||||||||| |||||| ||||||||||||    
T  2937 gttccaacactacttgtaaaacaaacacgatgcaattttcaaccgactcatactccaaaaccaagataacatcttgat 3014  T

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