View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9371_high_11 (Length: 359)
Name: NF9371_high_11
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9371_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 37789457 - 37789112
Alignment:
| Q |
1 |
cggcaaacatattcataaataaacttcccctgaaataatacatgacaaattaagagtgaaaatacattctagtcgatgaaaaaatggggttcactttgat |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
37789457 |
cggcaaacatattcataaataaacttcccctggaataatacatgacaaattaagagtgaaaatacattctagtcgatgaaaata--gggttcactttgat |
37789360 |
T |
|
| Q |
101 |
cccttggaaaagaaa-----gctccgttgtttttatctaagcagaacgcacaattattaatctctaagaaaaataaaccggattactttaatgacgaatt |
195 |
Q |
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||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37789359 |
cccttaaaaaagaaattaaagctaggttgtttttatctaagcagaacgcacaattattaatctctaagaaaaataaaccggattactttaatgacgaatt |
37789260 |
T |
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| Q |
196 |
gaaccttcatctaaacattaaaaaacatggattttatctagtttgtcactccaccattccaccattttagatgcatgacatgtcattcaattaaggaaca |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37789259 |
gaaccttcatctaaacattaaaaaacatggattttatctagtttgtcactccaccattccaccattttagatgcatgacatgtcattcaattaaggaaca |
37789160 |
T |
|
| Q |
296 |
acatgctcgttgacaatacttgcaaattaaagaaaaacatttaggtct |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37789159 |
acatgctcgttgacaatacttgcaaattaaagaaaaacatttaggtct |
37789112 |
T |
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