View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9371_low_10 (Length: 456)
Name: NF9371_low_10
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9371_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 225 - 391
Target Start/End: Complemental strand, 1237856 - 1237690
Alignment:
| Q |
225 |
agtgtttttgttgttgtaatcaagtttgattagaacgaaaaaattatttagaagtgaaaggggactaaacgtaatcttgtattgtgaggtgaactaggat |
324 |
Q |
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| T |
1237856 |
agtgtttttgttgttgtaatcaagtttgattctaacgaaaaaattatttagaagggaaaggggattaaacgtaatcttgtattgtgaggtgaactaggat |
1237757 |
T |
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| Q |
325 |
aaacatttgtgtcaatcttccttcccttaactcttttttaccaacacttcactttgaattctattgg |
391 |
Q |
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| T |
1237756 |
aaacatttgtgtcaatcttccttctcttaactcttttttaccaacacttcactttgaattctattgg |
1237690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 1243338 - 1243248
Alignment:
| Q |
17 |
acatacaatatattgcactctgtttatattatgtctatattgcataccttgttttaagaacattcaaaagaaacaaaagagatacatctag |
107 |
Q |
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| T |
1243338 |
acatacaatatattgcactctgtttatattatgtctatattgcataccttgttttaagaacattcaaaagaaacaaaagagatacatctag |
1243248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 135
Target Start/End: Original strand, 14192092 - 14192177
Alignment:
| Q |
48 |
tgtctatattgcataccttgttttaagaacattcaaaagaaacaaaagagatacatctagtgtacagtgcttaaatttgtttactact |
135 |
Q |
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| T |
14192092 |
tgtctatatt--ataccttgtctcatgaacattcaaaagaaataaaagagatacactaagtgtactatacttaaatttgtttactact |
14192177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 26201388 - 26201333
Alignment:
| Q |
121 |
aatttgtttactactcctagagtttgtataaatacaatatgttgtaatcaatctttg |
177 |
Q |
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| T |
26201388 |
aatttgtttactactcctaaagtttgtgtaaatac-atatgttgtaatcactctttg |
26201333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 170
Target Start/End: Complemental strand, 3407551 - 3407469
Alignment:
| Q |
87 |
aaacaaaagagatacatctagtgtacagtgcttaaatttgtttactactcctagagtttgtataaatacaatatgttgtaatca |
170 |
Q |
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| T |
3407551 |
aaacaaaagagatacactcagtgcactgagcttaa-tttcttttctacttctagagtttgtgtaaacacaatatgttgtaatca |
3407469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 19146174 - 19146206
Alignment:
| Q |
114 |
gtgcttaaatttgtttactactcctagagtttg |
146 |
Q |
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| T |
19146174 |
gtgcttaaatttgttttctactcctagagtttg |
19146206 |
T |
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