View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9371_low_11 (Length: 441)
Name: NF9371_low_11
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9371_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 14567328 - 14567189
Alignment:
| Q |
1 |
ttagccactgccatctcacctttacttcttacctttactggtggttttggtgatattccttcatattgtttttgctctattttggtttaatatctcatgt |
100 |
Q |
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| T |
14567328 |
ttagccactgccatctcacctttacttcttacctttactggttgttttggtgatattccttcatattgtttttgttctattttggtttaatatctcatgt |
14567229 |
T |
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| Q |
101 |
gaagatcgtcattttgctttatgtttcagcctggttggac |
140 |
Q |
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| T |
14567228 |
gaagatcgtcattttgctttatgtttcagcctggttggac |
14567189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 307 - 431
Target Start/End: Original strand, 33352512 - 33352636
Alignment:
| Q |
307 |
cattttatgaatggtttttgtttactcttaaaatcatttttcttaataggccttggaaataaataacaagagaaagtaaattataaagtaacttcaactt |
406 |
Q |
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| T |
33352512 |
cattgtataaatggttttagtttactcttaaaatcatttttctaaataggtcttggaaataaataacaacataaagtaaattataaagtaacttcaactt |
33352611 |
T |
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| Q |
407 |
tatgttttttctcaccacctctctg |
431 |
Q |
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| T |
33352612 |
tatgttttttctcaccacctctctg |
33352636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 184 - 422
Target Start/End: Original strand, 33352881 - 33353119
Alignment:
| Q |
184 |
ccttgaacttaattgtgatgacttctttgttttgcttgaaatgataatggtattgataggtgttgaaaataacaactttgtttt--tccta-aatgataa |
280 |
Q |
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| T |
33352881 |
ccttgaacttagttgtgatgacttctatgttt-gcttgaaatgataatgatattgatgagcattgaaaataaaaacttttttttcttcatcgaatgataa |
33352979 |
T |
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| Q |
281 |
tgatattgaggaatgttgtttaattgcattttatgaatggtttttgtttactcttaaaatcatttttcttaat-aggccttggaaataaataacaagaga |
379 |
Q |
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||||||||||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||| ||| | | | | ||| |||||||||| ||| |
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| T |
33352980 |
tgatattgaggaaggttggttaattgcattgtatgaatagtttttgtttactcttaaaatcatttttctaaatgaagtcatagaagtaaataacaacaga |
33353079 |
T |
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| Q |
380 |
aagtaaattataaagtaacttcaactttatgttttttctcacc |
422 |
Q |
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| T |
33353080 |
aaataaattatttagta---tcaactttatgttttttctcacc |
33353119 |
T |
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