View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9371_low_15 (Length: 417)
Name: NF9371_low_15
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9371_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 33722261 - 33721947
Alignment:
| Q |
16 |
accatcaatacttcccatgctgatccaaaacgatgtaactgtgactgcataatatcattcagacctgcaacatgccaagattccacaaaagttcggacag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33722261 |
accatcaatacttcccatgctgatccaaaacgatgtaactgtgactgcataatatcattcagacctgcaacatgccaagattccacaaaagttcggacag |
33722162 |
T |
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| Q |
116 |
tatgtcattcattctcttcaacatcttcacatagttagcaatttaagggacaaacagtatagcagaaacagaagtataaagctgggatgaaacaccatgt |
215 |
Q |
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| T |
33722161 |
tatgtcattcattctcttcaacatcttcacatagttagcaatttaagggacaaacagtatagcagaaacagaagtatacagctgggatgaaacaccatgt |
33722062 |
T |
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| Q |
216 |
tcacaatagatagaaatctgacataaaagaaaaatagcagaaactattaatatgagggacataacagtgtatttcttccagtaaaaaagttaaacttacc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33722061 |
tcacaatagatagaaatctgacataaaagaaaaatagcagaaactatcaatatgagggacataacagtgtatttcttccagtaaaaaagttaaac-tacc |
33721963 |
T |
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| Q |
316 |
atggaataaaagaagg |
331 |
Q |
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|||||||||||||||| |
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| T |
33721962 |
atggaataaaagaagg |
33721947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 33710241 - 33710139
Alignment:
| Q |
16 |
accatcaatacttcccatgctgatccaaaacgatgtaactgtgactgcataatatcattcagacctgcaacatgccaagattccacaaaagttcggacag |
115 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33710241 |
accatcaatacttcc-atgctgattcaaaacgatgtaactgtgactgcataatagtgttcagacccgcaacatgccaagattccacaaaagttcggacaa |
33710143 |
T |
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| Q |
116 |
tatg |
119 |
Q |
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|||| |
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| T |
33710142 |
tatg |
33710139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 305 - 387
Target Start/End: Original strand, 36874433 - 36874515
Alignment:
| Q |
305 |
ttaaacttaccatggaataaaagaagggaaagagtgaatctaaggacaatgttatacaggatgcaccaaaacagcagagccaa |
387 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||| |||||| |
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| T |
36874433 |
ttaaactcaccatgaaataaaagaagggaaagagtgaatctaaggacagtgctatacagggtgcaccaaaacagcaaagccaa |
36874515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 349
Target Start/End: Complemental strand, 37588305 - 37588179
Alignment:
| Q |
212 |
atgttcacaatagatagaaatctgaca-taaaagaaaaatagcagaaactattaatatgagggacataacagtgtatttcttccagtaaaaaagttaaac |
310 |
Q |
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||||||||||||||||||||||||||| || ||||||||| ||||||||||| |||| |||||||||||||||| ||||||| ||||||| |
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| T |
37588305 |
atgttcacaatagatagaaatctgacagtagaagaaaaatggcagaaactatcaata-----------acagtgtatttcttccggtaaaaa-gttaaac |
37588218 |
T |
|
| Q |
311 |
ttaccatggaataaaagaagggaaagagtgaatctaagg |
349 |
Q |
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| ||||| ||||||||||||| |||||| |||| |||| |
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| T |
37588217 |
tcaccataaaataaaagaagggtaagagtaaatcaaagg |
37588179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 39160471 - 39160424
Alignment:
| Q |
291 |
ttccagtaaaaaagttaaacttaccatggaataaaagaagggaaagag |
338 |
Q |
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||||||||||||||||||||| |||||| |||||| |||||||||||| |
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| T |
39160471 |
ttccagtaaaaaagttaaactcaccatgaaataaacgaagggaaagag |
39160424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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