View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9371_low_18 (Length: 396)
Name: NF9371_low_18
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9371_low_18 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 15 - 388
Target Start/End: Complemental strand, 3164970 - 3164597
Alignment:
| Q |
15 |
agttaaatcttccaccaaggaaacatcaaaggatggcctatccgccggaagtttcactcacgaaacgagaacaaactggtctcctgaatcccaggtttca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3164970 |
agttaaatcttccaccaaggaaacatcaaaggatggcctatctgccggaagtttcactcacgaaacgagaacaaactggtctcctgaatcccaggtttca |
3164871 |
T |
|
| Q |
115 |
gcggcatctgccgataataacgagactaagcttgaagttttgcaatctactgagcaggctaaagtttcgcaatcaaagcttgaagtcctcgaggctgaga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3164870 |
gcggcatctgccgataataacgagactaagcttgaagttttgcaacctactgagcaggctaaagtttcgcaatcaaagcttgaagtcctcgaggctgaga |
3164771 |
T |
|
| Q |
215 |
agaatgagaaaaaacatgattgtgaaaatggcatagaaagtcctgtatcacatgtaccttcccagaaattggagagagttaaatcttccactaaagaaac |
314 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3164770 |
agaacgagaaaaaacatgattgtgaaaatggcatagaaagtcctgtatcacatgtaccttcccagaaattggagagagttaaatcttccactaaagaaac |
3164671 |
T |
|
| Q |
315 |
atcaaaggatggcctgtctactggaagtttcactcacgaaacgaggacaaactggtctcctgaatcacaggttc |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
3164670 |
atcaaaggatggcctgtctactggaagtttcactcacgaaacgaggacaaactggtctcctgaatcccaggttc |
3164597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 384
Target Start/End: Complemental strand, 3164694 - 3164325
Alignment:
| Q |
15 |
agttaaatcttccaccaaggaaacatcaaaggatggcctatccgccggaagtttcactcacgaaacgagaacaaactggtctcctgaatcccaggtttca |
114 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| || | ||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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|
| T |
3164694 |
agttaaatcttccactaaagaaacatcaaaggatggcctgtctactggaagtttcactcacgaaacgaggacaaactggtctcctgaatcccaggttcca |
3164595 |
T |
|
| Q |
115 |
gcggcatctgccgataataacgagactaagcttgaagttttgcaatctactgagcaggctaaagtttcgcaatcaaagcttgaagtcctcgaggctgaga |
214 |
Q |
| |
|
|| |||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
3164594 |
gcagcatctgccgatgataatgagactaagcctgaagttttgcaatctactgagcaggctaaagttccgcaatcaaagcttgaaatcctcgaggctgaga |
3164495 |
T |
|
| Q |
215 |
agaatgagaaaaaacatgattgtgaaaatggcatagaaagtcctgtatcacatgtaccttcccagaaattggagagagttaaatcttccactaaagaaac |
314 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||| || |
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|
| T |
3164494 |
agaacgagaaaaaacatgattgtgaaaacggattagaaagtctcgtatcacatgcaccttcccagaaattggagagagttaaatcttgcactaaagagac |
3164395 |
T |
|
| Q |
315 |
atcaaaggatggcctgtctactggaagtttcactcacgaaacgaggacaaactggtctcctgaatcacag |
384 |
Q |
| |
|
||||||||||||||| ||| | |||||||||||| | ||||||||||||| ||||||| |||||||||| |
|
|
| T |
3164394 |
atcaaaggatggcctatctgccagaagtttcactcgcaaaacgaggacaaaatggtctcatgaatcacag |
3164325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 388
Target Start/End: Complemental strand, 3164418 - 3164045
Alignment:
| Q |
15 |
agttaaatcttccaccaaggaaacatcaaaggatggcctatccgccggaagtttcactcacgaaacgagaacaaactggtctcctgaatcccaggtttca |
114 |
Q |
| |
|
||||||||||| ||| || || |||||||||||||||||||| ||| |||||||||||| | ||||||| ||||| ||||||| |||||| ||| || || |
|
|
| T |
3164418 |
agttaaatcttgcactaaagagacatcaaaggatggcctatctgccagaagtttcactcgcaaaacgaggacaaaatggtctcatgaatcacagattcca |
3164319 |
T |
|
| Q |
115 |
gcggcatctgccgataataacgagactaagcttgaagttttgcaatctactgagcaggctaaagtttcgcaatcaaagcttgaagtcctcgaggctgaga |
214 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| |
|
|
| T |
3164318 |
gcggcatctgccgatgatagcgagactaagcctgaagttttgcaatctactgagcaggctaaagtttcgcaatcaaagcttgaggtcctcaaggccgaga |
3164219 |
T |
|
| Q |
215 |
agaatgagaaaaaacatgattgtgaaaatggcatagaaagtcctgtatcacatgtaccttcccagaaattggagagagttaaatcttccactaaagaaac |
314 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||| ||||||||| |||| ||||||||||||||||| |||||| |||||| ||||||||| |
|
|
| T |
3164218 |
agaatgagaaaaaagatgattgtgaaaatggcttagaaagtccagtatcacatttaccatcccagaaattggagagcgttaaaacttccattaaagaaac |
3164119 |
T |
|
| Q |
315 |
atcaaaggatggcctgtctactggaagtttcactcacgaaacgaggacaaactggtctcctgaatcacaggttc |
388 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||| ||||||||||||||||| ||||| |||||| | ||||||| |
|
|
| T |
3164118 |
atcaaaggatggcctatcttccggaagtttcacacacgaaacgaggacaaattggtcccctgaaacccaggttc |
3164045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 16 - 388
Target Start/End: Complemental strand, 3164141 - 3163769
Alignment:
| Q |
16 |
gttaaatcttccaccaaggaaacatcaaaggatggcctatccgccggaagtttcactcacgaaacgagaacaaactggtctcctgaatcccaggtttcag |
115 |
Q |
| |
|
|||||| |||||| || ||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||| |||||| |||||||| ||| |
|
|
| T |
3164141 |
gttaaaacttccattaaagaaacatcaaaggatggcctatcttccggaagtttcacacacgaaacgaggacaaattggtcccctgaaacccaggttccag |
3164042 |
T |
|
| Q |
116 |
cggcatctgccgataataacgagactaagcttgaagttttgcaatctactgagcaggctaaagtttcgcaatcaaagcttgaagtcctcgaggctgagaa |
215 |
Q |
| |
|
| || ||||| ||| ||||| ||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||| |||||| |
|
|
| T |
3164041 |
ctgcgtctgctgatgataacaagactaagcctgaagttttgcaatctactgagcaggataaagtttcgggatcaaagcttgaagtcctcaaggatgagaa |
3163942 |
T |
|
| Q |
216 |
gaatgagaaaaaacatgattgtgaaaatggcatagaaagtcctgtatcacatgtaccttcccagaaattggagagagttaaatcttccactaaagaaaca |
315 |
Q |
| |
|
||| || |||||| |||||||| |||||||| |||||||||| ||||||||| |||| || ||||||||| ||||||| |||||||| ||||||| ||| |
|
|
| T |
3163941 |
gaaggaaaaaaaagatgattgtcaaaatggcttagaaagtccagtatcacatttaccatctcagaaattgatgagagttgaatcttccgctaaagagaca |
3163842 |
T |
|
| Q |
316 |
tcaaaggatggcctgtctactggaagtttcactcacgaaacgaggacaaactggtctcctgaatcacaggttc |
388 |
Q |
| |
|
|||||||| || | ||| || |||||||| || ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
3163841 |
tcaaaggaaggattatctgtcgggagtttcacacaagaaacaaggacaaactggtctcctgaatcccaggttc |
3163769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 185 - 387
Target Start/End: Complemental strand, 3165076 - 3164874
Alignment:
| Q |
185 |
aatcaaagcttgaagtcctcgaggctgagaagaatgagaaaaaacatgattgtgaaaatggcatagaaagtcctgtatcacatgtaccttcccagaaatt |
284 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||| | ||||||| |||||| |||||||| |
|
|
| T |
3165076 |
aatcaaagattgaagacctcgaggctgagaagaacgaggaaaaagatgattgtgaaaatggcttagaaagtccagcatcacatttacctttgcagaaatt |
3164977 |
T |
|
| Q |
285 |
ggagagagttaaatcttccactaaagaaacatcaaaggatggcctgtctactggaagtttcactcacgaaacgaggacaaactggtctcctgaatcacag |
384 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||| ||| | ||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
3164976 |
ggagagagttaaatcttccaccaaggaaacatcaaaggatggcctatctgccggaagtttcactcacgaaacgagaacaaactggtctcctgaatcccag |
3164877 |
T |
|
| Q |
385 |
gtt |
387 |
Q |
| |
|
||| |
|
|
| T |
3164876 |
gtt |
3164874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 185 - 386
Target Start/End: Complemental strand, 22844322 - 22844119
Alignment:
| Q |
185 |
aatcaaagcttgaagtcctcgaggctgagaagaatgagaaaaaacatgattgtgaaaatggcatagaaagtcctgtatcacatgtaccttcccagaaatt |
284 |
Q |
| |
|
|||||||| |||||| |||| ||||||||||||||||| ||||| ||||||||||||||||| || ||||||| ||||||| ||||||| || ||||| |
|
|
| T |
22844322 |
aatcaaagattgaagacctcaaggctgagaagaatgaggaaaaagatgattgtgaaaatggcttaaaaagtccaacatcacatttaccttcgcaaaaatt |
22844223 |
T |
|
| Q |
285 |
ggagagagttaaatctt--ccactaaagaaacatcaaaggatggcctgtctactggaagtttcactcacgaaacgaggacaaactggtctcctgaatcac |
382 |
Q |
| |
|
||||||||||||| ||| |||| || |||||||||||||||||||| ||| | |||||||| |||||||||||||||| |||||||| ||||||||| | |
|
|
| T |
22844222 |
ggagagagttaaaccttccccaccaaggaaacatcaaaggatggcctatctgccggaagttttactcacgaaacgaggataaactggtgtcctgaatccc |
22844123 |
T |
|
| Q |
383 |
aggt |
386 |
Q |
| |
|
|||| |
|
|
| T |
22844122 |
aggt |
22844119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 22844203 - 22844092
Alignment:
| Q |
26 |
ccaccaaggaaacatcaaaggatggcctatccgccggaagtttcactcacgaaacgagaacaaactggtctcctgaatcccaggtttcagcggcatctgc |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||||||| ||||||||||||||| || ||||||| |
|
|
| T |
22844203 |
ccaccaaggaaacatcaaaggatggcctatctgccggaagttttactcacgaaacgaggataaactggtgtcctgaatcccaggt-----cgccatctgc |
22844109 |
T |
|
| Q |
126 |
cgataataacgagacta |
142 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
22844108 |
cgataataacgagacta |
22844092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 3163866 - 3163700
Alignment:
| Q |
15 |
agttaaatcttccaccaaggaaacatcaaaggatggcctatccgccggaagtttcactcacgaaacgagaacaaactggtctcctgaatcccaggtttca |
114 |
Q |
| |
|
|||| |||||||| | || || ||||||||||| || |||| | ||| |||||||| || ||||| || ||||||||||||||||||||||||||| || |
|
|
| T |
3163866 |
agttgaatcttccgctaaagagacatcaaaggaaggattatctgtcgggagtttcacacaagaaacaaggacaaactggtctcctgaatcccaggttcca |
3163767 |
T |
|
| Q |
115 |
gcggcatctgccgataataacgagactaagcttgaagttttgcaatctactgagcaggctaaagttt |
181 |
Q |
| |
|
|| |||||| ||||| |||| || ||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
3163766 |
gctgcatcttccgatgataatgaaactaagcctgaagtttcacaatctactgagcaggctaaagttt |
3163700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 35867452 - 35867517
Alignment:
| Q |
261 |
atcacatgtaccttcccagaaattggagagagttaaatcttccactaaagaaacatcaaaggatgg |
326 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||| ||||||| |||||||| || ||||||||||| |
|
|
| T |
35867452 |
atcacatgtcccttcacagaaattggagagagttgaatcttcaactaaagagacgtcaaaggatgg |
35867517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 388
Target Start/End: Original strand, 35867184 - 35867306
Alignment:
| Q |
266 |
atgtaccttcccagaaattggagagagttaaatcttccactaaagaaacatcaaaggatggcctgtctactggaagtttcactcacgaaacgaggacaaa |
365 |
Q |
| |
|
|||| ||||| |||||||||||||||||| ||||||||| |||||| ||||||||||| || ||| |||| ||||| || ||| |||| ||||| |
|
|
| T |
35867184 |
atgttccttcacagaaattggagagagttgaatcttccagtaaagagttgtcaaaggatgggctatctgctgggagttttacacaccaaaccgatacaaa |
35867283 |
T |
|
| Q |
366 |
ctggtctcctgaatcacaggttc |
388 |
Q |
| |
|
|||||||| ||||| ||||||| |
|
|
| T |
35867284 |
ctggtctcatgaatgccaggttc |
35867306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 35867097 - 35867149
Alignment:
| Q |
185 |
aatcaaagcttgaagtcctcgaggctgagaagaatgagaaaaaacatgattgt |
237 |
Q |
| |
|
|||||||||||||| ||||| |||| || ||||||||||||| | |||||||| |
|
|
| T |
35867097 |
aatcaaagcttgaattcctcaaggccgacaagaatgagaaaagagatgattgt |
35867149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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