View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9371_low_19 (Length: 396)
Name: NF9371_low_19
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9371_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 4365327 - 4364950
Alignment:
| Q |
1 |
aaaaatggctcaaacacttcgtttttcaatttccttgattaatcagaaagaaacaagagtcttaaaatctcttgatgannnnnnnnccaacaaagtttct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4365327 |
aaaaatggctcaaacacttcgtttttcaatttccttgattaatcagaaagaaacaagagtcttaaaatctcttgatgattttttttccaacaaagtttct |
4365228 |
T |
|
| Q |
101 |
tgtccaaaaatgaaaccatctattggtcacaaactcaaagcaaagagttcaatacaagaaactcatttcacaacagacaacaacaattctgctgtaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4365227 |
tgtccaaaaatgaaaccatctattggtcacaaactcaaagcaaagagttcaatacaagaaactcatttcacaacagacaacaacaattctgctgtaaaga |
4365128 |
T |
|
| Q |
201 |
aagacaagaaatgggagaagattcacacgtcatcggtcactcataaccacgatgctgattcaactagagtaccggtgtttgtgatgttgccattagacac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
4365127 |
aagacaagaaatgggagaagattcacacgtcatcggtcactcataaccacgatggtgattcgaatagagtaccggtgtttgtgatgttgccattagacac |
4365028 |
T |
|
| Q |
301 |
ggtaacaatgggaggaaaattgaataaagcaagggcaatgaatgctagtttgatggctttgaagagtgctggtgttga |
378 |
Q |
| |
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| T |
4365027 |
ggtaacaatgggaggaaaattgaataaagcaagagcaatgaatgctagtttgatggctttgaagagtgctggtgttga |
4364950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 5 - 378
Target Start/End: Complemental strand, 4372910 - 4372543
Alignment:
| Q |
5 |
atggctcaaacacttcgtttttcaatttccttgattaatcagaaagaaacaagagtcttaaaatctcttgatgannnnnnnnccaacaaagtttcttgtc |
104 |
Q |
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||||||| ||||||||||| |||||||||||| ||| | | |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4372910 |
atggctctaacacttcgttcttcaatttccttcattcacaaaaaagaaacaagagtcttaaaatctcttgatgatttttcttccaacaaagtttcttgtc |
4372811 |
T |
|
| Q |
105 |
caaaaatgaaaccatctattggtcacaaactcaaagcaaagagttcaatacaagaaactcatttcacaacagacaacaacaattctgctgtaaagaaaga |
204 |
Q |
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| ||| | ||||| || || || |||||||||||||||||||| |||||||| |||||||||| || |||| ||| ||||| || ||| || | |
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| T |
4372810 |
cgaaattcaaacc-----tttgtttcat-ctcaaagcaaagagttcaatgcaagaaacacatttcacaaaggaaaacaccaactctgcagttaaggaaaa |
4372717 |
T |
|
| Q |
205 |
caagaaatgggagaagattcacacgtcatcggtcactcataaccacgatgctgattcaactagagtaccggtgtttgtgatgttgccattagacacggta |
304 |
Q |
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||||||| |||||||| ||| | || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4372716 |
caagaaaagggagaaggttctcgcgccatcgattgctcataaccacgatgctgattcaactagagtaccggtgtttgtgatgttgccattagacacggta |
4372617 |
T |
|
| Q |
305 |
acaatgggaggaaaattgaataaagcaagggcaatgaatgctagtttgatggctttgaagagtgctggtgttga |
378 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4372616 |
acaatgggaggaaaattgaataaagcaagagcaatgaatgctagtttgatggctttgaagagtgctggtgttga |
4372543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 269 - 378
Target Start/End: Original strand, 41042491 - 41042600
Alignment:
| Q |
269 |
gtaccggtgtttgtgatgttgccattagacacggtaacaatgggaggaaaattgaataaagcaagggcaatgaatgctagtttgatggctttgaagagtg |
368 |
Q |
| |
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||||| || ||||||||| | ||||| || || ||||||||||||||||| ||||| || |||| ||||||||||||||||||||||||||||| |||| |
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| T |
41042491 |
gtaccagtttttgtgatgcttccattggatacagtaacaatgggaggaaacttgaacaagccaagagcaatgaatgctagtttgatggctttgaaaagtg |
41042590 |
T |
|
| Q |
369 |
ctggtgttga |
378 |
Q |
| |
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|||| ||||| |
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|
| T |
41042591 |
ctggagttga |
41042600 |
T |
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