View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9371_low_20 (Length: 395)
Name: NF9371_low_20
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9371_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 48778699 - 48778326
Alignment:
| Q |
18 |
catattttgtatgccttgaaaaagtgcaaaattgtcttttgcgtataaatatattcaaaattactttttatatgcataactacgcttaatatgagactaa |
117 |
Q |
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| T |
48778699 |
catattttgtatgccttgaaaaagtgcaaaattgtcttttgcgtataaatatattcaaaattactttttatatgcataactacacttaatatgagactaa |
48778600 |
T |
|
| Q |
118 |
ctgagcagtaatcactagaatgatcatatcatattgttaatatttttagtagtattatcaagaccgtcacgtgtaatgtgtgcgcgcactcaaacacaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48778599 |
ctgagcagtaatcactagaatgatcatatcatattgttaatattttcaatagtattatcaagaccgtcacgtgtaatgtgtgcgcgcactcaaacacaga |
48778500 |
T |
|
| Q |
218 |
gacacacacactcatgttcattatttttatgcaatcaattgtgtcagcatgaggataagaggtccggaataaataagtaaaagaaaaagcccttgcaaag |
317 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48778499 |
gacatacacactcatgtgcattatttttatgcaatcaattgtgtcagcatgagcataagaggtccggaataaataagtaaaagaaaaagcccttgcaaag |
48778400 |
T |
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| Q |
318 |
attttgcaacagtattatccagagataaatttcacnnnnnnnggagcaatgttacaaattaccaccaccaaact |
391 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48778399 |
attttgcaacagtattatccagagataaatttcacaaaaaaaggagcaatgttacaaattaccaccaccaaact |
48778326 |
T |
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