View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9371_low_22 (Length: 365)
Name: NF9371_low_22
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9371_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 46823168 - 46822905
Alignment:
| Q |
14 |
agacccaattgtgtagtttgagaaaggactactctttcttttcccaccctcatacatttcgaagactcttggcnnnnnnnnacatgttcagattctaaaa |
113 |
Q |
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| T |
46823168 |
agacccaattgtgtagtttgagaaaggactactctttattttcccaccctcatacatctcaaagactcttggcttttttttacatgttcggattctaaaa |
46823069 |
T |
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| Q |
114 |
ttcggacaaatcaaaagcctttgagaagtgtggtaggtgagaaaagagattcacaagaaaaagatatttgaaaatggtagatcaactcatttatagatgt |
213 |
Q |
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| T |
46823068 |
ttcggacaaatcaagagcctttgagaagtgtggtgggtgagaaaagagattcacaagaaaaagatatttgaaaatggtagatcaactcatttatagatgt |
46822969 |
T |
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| Q |
214 |
cttgaatcaagccgataagttccccttttcagcaagccaatacttaaaaaaggacttcaaaatg |
277 |
Q |
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| T |
46822968 |
cttgaatcaagccgataagttccccttttcagcaagccaatacttaaaaaaggacttcaaaatg |
46822905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 46822880 - 46822838
Alignment:
| Q |
303 |
gaggaaaggactgcgaaatggttgttggttctttggacataaa |
345 |
Q |
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| T |
46822880 |
gaggaaaggactgcgaaatggttgttggttctttggacataaa |
46822838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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