View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9371_low_26 (Length: 341)
Name: NF9371_low_26
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9371_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 39460723 - 39460876
Alignment:
| Q |
1 |
aaaaccaacttcgtaaacaattatgtggcatttctcaaccctccccgacgagttaggattatctccattgtaggatcctaaccccttcccaacaccttcc |
100 |
Q |
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| T |
39460723 |
aaaaccaacttcgtaaacaattatgtggcatttctcaaccctccccgacgagttaggattatctccattgtaggatcctaaccccttcccaacaccttcc |
39460822 |
T |
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| Q |
101 |
cattaatggctataaaagttcttctcctcataacacaacaacaaatccaatctc |
154 |
Q |
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| T |
39460823 |
cattaatggctataaaagttcttctcctcataacacaacaacaaatccaatctc |
39460876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 190 - 326
Target Start/End: Original strand, 39460912 - 39461042
Alignment:
| Q |
190 |
gagcattattttccttatgtttgagctgaggctgctgcattcttctcctcttctggggagnnnnnnnnnctcccaacaatgtcaggtttgcaacacatag |
289 |
Q |
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| T |
39460912 |
gagcattattttccttatgtttgagctgaggctgctgcattcttctcctcttctggggagttttttt---tcccaa---tgtcaggtttgcaacacatag |
39461005 |
T |
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| Q |
290 |
gtcgatgatgaatgaggaaaatatcgaattcaataac |
326 |
Q |
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| T |
39461006 |
gtcgatgatgaatgaggaaaatatcgaattcaataac |
39461042 |
T |
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