View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9371_low_35 (Length: 308)
Name: NF9371_low_35
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9371_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 30350314 - 30350588
Alignment:
| Q |
14 |
agacagaaatttatgatctacgtacaaagaaa-caagtaaataaaaaattgaaaagaatggatagtatagtattatattcaccttctcatcaataaactt |
112 |
Q |
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| T |
30350314 |
agacagaaatttatgatctac----aaagaaaacaagtaaataaaaaattgaaaagaatggatagtatagtattatattcaccttctcatcaataaactt |
30350409 |
T |
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| Q |
113 |
tgcccaaaaacgagctaatgctttctcatatggatctagtggcaacaaagggttatccttccatgtctcatctatgtactcaaggataacaagtgattca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30350410 |
tgcccaaaaacgagctaatgctttctcatatggatctagtggcaacaaagggttgtccttccatgtctcatctatgtactcaaggataacaagtgattca |
30350509 |
T |
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| Q |
213 |
gcaattgattttccatcatgaagtagcactggaactttcttgtaaactggattagactcaagaagtaaaggacttttat |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30350510 |
gcaattgattttccatcatgaagtagcactggaactttcttgtaaactggattagactcaagaagtaaaggacttttat |
30350588 |
T |
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