View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9371_low_37 (Length: 300)

Name: NF9371_low_37
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9371_low_37
NF9371_low_37
[»] chr4 (5 HSPs)
chr4 (1-168)||(35030451-35030618)
chr4 (165-284)||(35030668-35030787)
chr4 (100-168)||(27756118-27756186)
chr4 (102-150)||(30534708-30534756)
chr4 (1-60)||(35020397-35020456)
[»] chr3 (2 HSPs)
chr3 (96-155)||(31750946-31751005)
chr3 (97-150)||(28955908-28955961)
[»] chr5 (1 HSPs)
chr5 (96-150)||(15259745-15259799)
[»] chr2 (3 HSPs)
chr2 (99-155)||(14510972-14511028)
chr2 (99-168)||(15824953-15825022)
chr2 (93-154)||(29981744-29981805)
[»] scaffold0015 (1 HSPs)
scaffold0015 (114-161)||(43232-43279)
[»] chr1 (3 HSPs)
chr1 (99-158)||(14465074-14465133)
chr1 (93-151)||(28554370-28554428)
chr1 (114-151)||(11642714-11642751)
[»] chr8 (1 HSPs)
chr8 (97-155)||(25106743-25106801)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 35030451 - 35030618
Alignment:
Q  1 gatactataatcaaagctacttgtatggtacgtcacttgccacctttgtcggctctttcagttattaaaacacttctatgttttttaattggttgtcatt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35030451 gatactataatcaaagttacttgtatggtacgtcacttgccacctttgtcggctctttcagttattaaaacacttctatgttttttaattggttgtcatt 35030550  T
Q  101 ttgatgaatttgcatatgaattttaaagatttaaatcaatgattttattttgatacgaacttttaatg 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35030551 ttgatgaatttgcatatgaattttaaagatttaaatcaatgattttattttgatacgaacttttaatg 35030618  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 165 - 284
Target Start/End: Original strand, 35030668 - 35030787
Alignment:
Q  165 aatgacgagattgttatttaagattaatggtcaaaggacaataagtataattttacatttttattactatcctaatgttttaggagaaaggagctatcat 264  Q
    |||||||| |||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35030668 aatgacgaaattgttatttaaaattaatggtcaaaagacaataagtataattttgcatttttattactatcctaatgttttaggagaaaggagctatcat 35030767  T
Q  265 aataatttagaccaacaatt 284  Q
    ||||||||| ||||||||||    
T  35030768 aataatttaaaccaacaatt 35030787  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 27756118 - 27756186
Alignment:
Q  100 tttgatgaatttgcatatgaattttaaagatttaaatcaatgattttattttgatacgaacttttaatg 168  Q
    |||||| |||| | |||| |||||| || ||| ||||| ||||||||||||||||| ||||||||||||    
T  27756118 tttgattaattcgtatataaattttgaaaattcaaatctatgattttattttgatatgaacttttaatg 27756186  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 30534756 - 30534708
Alignment:
Q  102 tgatgaatttgcatatgaattttaaagatttaaatcaatgattttattt 150  Q
    |||| |||||||||||| |||||||||||| ||||| ||||||||||||    
T  30534756 tgatcaatttgcatatggattttaaagattcaaatctatgattttattt 30534708  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 35020397 - 35020456
Alignment:
Q  1 gatactataatcaaagctacttgtatggtacgtcacttgccacctttgtcggctctttca 60  Q
    ||||||| ||||||||| |||||||||||| |||||||||  || ||||| |||||||||    
T  35020397 gatactacaatcaaagccacttgtatggtatgtcacttgcttccattgtctgctctttca 35020456  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 31751005 - 31750946
Alignment:
Q  96 tcattttgatgaatttgcatatgaattttaaagatttaaatcaatgattttattttgata 155  Q
    |||||||||| |||||||||||||||||| |||||| ||||| ||| |||||||||||||    
T  31751005 tcattttgattaatttgcatatgaattttcaagattcaaatctatggttttattttgata 31750946  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 28955961 - 28955908
Alignment:
Q  97 cattttgatgaatttgcatatgaattttaaagatttaaatcaatgattttattt 150  Q
    ||||||||| || ||||||||| ||||| |||||| ||||| ||||||||||||    
T  28955961 cattttgatcaacttgcatatgtattttcaagattcaaatctatgattttattt 28955908  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 15259745 - 15259799
Alignment:
Q  96 tcattttgatgaatttgcatatgaattttaaagatttaaatcaatgattttattt 150  Q
    |||||||||  |||||||||||||||||| |||||||||||| |||| |||||||    
T  15259745 tcattttgaacaatttgcatatgaatttttaagatttaaatctatgaatttattt 15259799  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 14511028 - 14510972
Alignment:
Q  99 ttttgatgaatttgcatatgaattttaaagatttaaatcaatgattttattttgata 155  Q
    ||||||| |||||| ||||||||||| |||||| ||||| || ||||||||||||||    
T  14511028 ttttgataaatttgtatatgaattttcaagattcaaatctataattttattttgata 14510972  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 15824953 - 15825022
Alignment:
Q  99 ttttgatgaatttgcatatgaattttaaagatttaaatcaatgattttattttgatacgaacttttaatg 168  Q
    ||||||| | |||| ||||| ||||| || ||||||||  ||||||||||||||||| || |||||||||    
T  15824953 ttttgataagtttgtatatggatttttaaaatttaaatttatgattttattttgatatgagcttttaatg 15825022  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 29981744 - 29981805
Alignment:
Q  93 ttgtcattttgatgaatttgcatatgaattttaaagatttaaatcaatgattttattttgat 154  Q
    ||||| ||| ||| ||| |||||||| ||||| |||||||||||| ||| ||||||||||||    
T  29981744 ttgtcttttcgatcaatctgcatatggattttcaagatttaaatctatggttttattttgat 29981805  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 43279 - 43232
Alignment:
Q  114 atatgaattttaaagatttaaatcaatgattttattttgatacgaact 161  Q
    ||||||||||| |||||| ||||||||||||||||||| ||| |||||    
T  43279 atatgaattttcaagattcaaatcaatgattttattttaatatgaact 43232  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 14465074 - 14465133
Alignment:
Q  99 ttttgatgaatttgcatatgaattttaaagatttaaatcaatgattttattttgatacga 158  Q
    ||||||| ||||| |||||||||||| |||||| || |  ||||||||||||||||||||    
T  14465074 ttttgatcaattttcatatgaattttcaagattaaagtttatgattttattttgatacga 14465133  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 28554428 - 28554370
Alignment:
Q  93 ttgtcattttgatgaatttgcatatgaattttaaagatttaaatcaatgattttatttt 151  Q
    |||||||||||||  |||| |||||||||||| |||||| ||||  |||||||||||||    
T  28554428 ttgtcattttgatccatttacatatgaatttttaagattaaaattcatgattttatttt 28554370  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 11642714 - 11642751
Alignment:
Q  114 atatgaattttaaagatttaaatcaatgattttatttt 151  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  11642714 atatgaattttcaagatttaaatctatgattttatttt 11642751  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 25106801 - 25106743
Alignment:
Q  97 cattttgatgaatttgcatatgaattttaaagatttaaatcaatgattttattttgata 155  Q
    ||||||||| |||||||||||| ||||| |||||||||||  ||||||| |||| ||||    
T  25106801 cattttgatcaatttgcatatggattttcaagatttaaatatatgatttcatttcgata 25106743  T

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