View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9371_low_39 (Length: 293)
Name: NF9371_low_39
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9371_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 5218442 - 5218571
Alignment:
| Q |
1 |
tcaaaatgttacgtaccaccaaatatagaaatcctgtgctctttgagcggcaattatgtcttcactagtatttgttaatggaacaaaaccaaatacaagg |
100 |
Q |
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| T |
5218442 |
tcaaaacgttacgtaccacccaagatagaaatcctgtgctctttgagcggcaattatgtcttcactagtatttgttagtggaacaaaaccaaaaacaagg |
5218541 |
T |
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| Q |
101 |
agattaaacccaataaatccatgctgcttg |
130 |
Q |
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| T |
5218542 |
agattaaacccaataaatccttgttgcttg |
5218571 |
T |
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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 25327749 - 25327831
Alignment:
| Q |
41 |
ctttgagcggcaattatgtcttcactagtatttgttaatggaacaaaaccaaatacaaggagattaaacccaataaatccatg |
123 |
Q |
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| T |
25327749 |
ctttgagtggcaactatatcttcactagtatttgttagtggaacaaaaccaaaagtaagaagattaaacccaataaatccatg |
25327831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 25321916 - 25322012
Alignment:
| Q |
41 |
ctttgagcggcaattatgtcttcactagtatttgttaatggaacaaaaccaaatacaaggagattaaacccaataaatccatgctgcttggcctaca |
137 |
Q |
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| T |
25321916 |
ctttgagtggcaattatatcttcactagtatttgtcagtggaacaaatccaaaagtaagaagattaaacccaataaatccatgttgcatgccctaca |
25322012 |
T |
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