View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9371_low_4 (Length: 708)

Name: NF9371_low_4
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9371_low_4
NF9371_low_4
[»] chr5 (33 HSPs)
chr5 (1-692)||(2468245-2468935)
chr5 (393-456)||(11457148-11457210)
chr5 (395-503)||(2880506-2880614)
chr5 (394-531)||(32172629-32172764)
chr5 (433-497)||(17258880-17258944)
chr5 (425-503)||(5284437-5284515)
chr5 (413-503)||(17368679-17368768)
chr5 (433-503)||(40205071-40205141)
chr5 (394-478)||(11700337-11700420)
chr5 (433-493)||(12521541-12521601)
chr5 (433-497)||(32408589-32408653)
chr5 (433-497)||(36774704-36774768)
chr5 (433-492)||(985627-985686)
chr5 (433-503)||(1899157-1899227)
chr5 (399-497)||(7674657-7674754)
chr5 (433-531)||(10272428-10272525)
chr5 (433-491)||(14295521-14295579)
chr5 (437-503)||(15074750-15074816)
chr5 (433-503)||(18543194-18543263)
chr5 (433-503)||(28982013-28982083)
chr5 (581-619)||(29115364-29115402)
chr5 (394-492)||(30217096-30217192)
chr5 (399-497)||(37611179-37611276)
chr5 (399-497)||(37787909-37788006)
chr5 (393-470)||(6109519-6109595)
chr5 (419-492)||(36542266-36542338)
chr5 (403-452)||(38047847-38047895)
chr5 (445-497)||(10798421-10798473)
chr5 (433-497)||(12242707-12242771)
chr5 (440-492)||(28413288-28413340)
chr5 (443-523)||(29588863-29588942)
chr5 (433-473)||(37794695-37794735)
chr5 (581-621)||(39257537-39257577)
[»] chr8 (31 HSPs)
chr8 (399-499)||(14949873-14949972)
chr8 (400-531)||(5088824-5088957)
chr8 (393-497)||(11813063-11813166)
chr8 (433-497)||(20672759-20672823)
chr8 (402-497)||(30191108-30191202)
chr8 (400-473)||(34849136-34849209)
chr8 (433-497)||(25869263-25869327)
chr8 (399-503)||(39551173-39551276)
chr8 (433-496)||(3254235-3254298)
chr8 (434-492)||(42370359-42370417)
chr8 (412-493)||(10062118-10062198)
chr8 (433-497)||(29169094-29169158)
chr8 (437-497)||(30277246-30277306)
chr8 (433-497)||(33553249-33553313)
chr8 (399-486)||(6950342-6950428)
chr8 (394-497)||(11569416-11569518)
chr8 (433-492)||(11795106-11795165)
chr8 (434-497)||(28769337-28769400)
chr8 (398-497)||(42215269-42215367)
chr8 (394-497)||(43504760-43504862)
chr8 (433-531)||(12361168-12361265)
chr8 (418-484)||(29589949-29590013)
chr8 (399-457)||(29890844-29890901)
chr8 (433-503)||(38421267-38421337)
chr8 (439-493)||(39866737-39866791)
chr8 (399-465)||(41442417-41442482)
chr8 (433-490)||(11183561-11183618)
chr8 (440-497)||(31705094-31705151)
chr8 (408-492)||(2458539-2458622)
chr8 (395-471)||(10722659-10722734)
chr8 (399-478)||(21130642-21130718)
[»] chr6 (28 HSPs)
chr6 (399-492)||(34939758-34939850)
chr6 (394-497)||(32665668-32665770)
chr6 (413-492)||(34939527-34939605)
chr6 (420-497)||(27909623-27909699)
chr6 (399-531)||(281812-281942)
chr6 (433-493)||(32577983-32578043)
chr6 (393-457)||(32917246-32917309)
chr6 (433-491)||(4420658-4420716)
chr6 (433-502)||(5564125-5564194)
chr6 (416-492)||(30523951-30524026)
chr6 (433-472)||(30784590-30784629)
chr6 (393-467)||(769177-769250)
chr6 (433-491)||(3168258-3168316)
chr6 (433-503)||(9732479-9732549)
chr6 (435-497)||(31583688-31583750)
chr6 (570-619)||(2034582-2034631)
chr6 (418-503)||(2117406-2117490)
chr6 (399-496)||(2460115-2460211)
chr6 (433-482)||(6536971-6537020)
chr6 (433-478)||(9667982-9668027)
chr6 (433-490)||(13908479-13908536)
chr6 (432-497)||(19275632-19275697)
chr6 (400-457)||(27595532-27595588)
chr6 (398-497)||(2205554-2205651)
chr6 (433-497)||(3155185-3155248)
chr6 (433-481)||(30863271-30863319)
chr6 (399-503)||(32975981-32976084)
chr6 (393-497)||(34403864-34403967)
[»] scaffold0020 (1 HSPs)
scaffold0020 (393-497)||(159931-160034)
[»] chr4 (34 HSPs)
chr4 (404-503)||(6978931-6979029)
chr4 (400-503)||(42866071-42866173)
chr4 (399-502)||(6987705-6987807)
chr4 (433-487)||(29467621-29467675)
chr4 (433-497)||(55547041-55547105)
chr4 (436-503)||(4798566-4798633)
chr4 (435-497)||(7694009-7694071)
chr4 (393-478)||(1137740-1137824)
chr4 (444-493)||(19429722-19429771)
chr4 (393-470)||(50799988-50800064)
chr4 (399-503)||(11264304-11264407)
chr4 (433-497)||(19304935-19304999)
chr4 (387-487)||(20936181-20936280)
chr4 (433-497)||(21157777-21157841)
chr4 (433-497)||(23819098-23819162)
chr4 (404-464)||(25571302-25571361)
chr4 (408-492)||(28614781-28614864)
chr4 (400-503)||(2996576-2996678)
chr4 (432-531)||(54325033-54325131)
chr4 (414-492)||(2874603-2874680)
chr4 (440-490)||(5131254-5131304)
chr4 (399-497)||(21043199-21043296)
chr4 (416-503)||(24370932-24371020)
chr4 (433-503)||(29263373-29263443)
chr4 (419-497)||(34398668-34398746)
chr4 (440-486)||(35405967-35406013)
chr4 (399-492)||(7063506-7063598)
chr4 (399-452)||(7730654-7730706)
chr4 (412-493)||(21952961-21953041)
chr4 (399-496)||(27123316-27123412)
chr4 (399-503)||(1965944-1966046)
chr4 (432-492)||(14011248-14011308)
chr4 (434-522)||(30207569-30207656)
chr4 (442-522)||(30338597-30338677)
[»] chr3 (33 HSPs)
chr3 (394-497)||(37273143-37273245)
chr3 (400-497)||(21574499-21574595)
chr3 (393-463)||(49772626-49772695)
chr3 (433-494)||(36200108-36200169)
chr3 (433-489)||(27290898-27290954)
chr3 (402-497)||(36646349-36646443)
chr3 (418-497)||(37825131-37825210)
chr3 (432-503)||(40122749-40122820)
chr3 (433-523)||(50952316-50952406)
chr3 (432-497)||(13709819-13709884)
chr3 (400-457)||(24603717-24603773)
chr3 (433-478)||(31010430-31010475)
chr3 (435-504)||(48048981-48049050)
chr3 (432-484)||(1360522-1360574)
chr3 (433-481)||(30750025-30750073)
chr3 (433-497)||(30923895-30923959)
chr3 (433-497)||(31403156-31403220)
chr3 (445-497)||(40608390-40608442)
chr3 (436-503)||(22214659-22214726)
chr3 (394-497)||(39311638-39311740)
chr3 (399-457)||(42747745-42747804)
chr3 (399-473)||(11039303-11039376)
chr3 (433-487)||(36101587-36101641)
chr3 (420-497)||(24887269-24887344)
chr3 (581-626)||(49587077-49587122)
chr3 (439-503)||(237400-237464)
chr3 (433-497)||(1217797-1217861)
chr3 (433-497)||(9279323-9279387)
chr3 (433-497)||(24785214-24785278)
chr3 (416-464)||(41724254-41724301)
chr3 (394-478)||(43115084-43115167)
chr3 (433-485)||(45432936-45432988)
chr3 (433-497)||(48528565-48528629)
[»] chr1 (33 HSPs)
chr1 (400-503)||(7262483-7262585)
chr1 (416-502)||(3924628-3924713)
chr1 (399-490)||(28935840-28935930)
chr1 (402-491)||(15579497-15579585)
chr1 (399-487)||(10439705-10439792)
chr1 (433-497)||(12477284-12477348)
chr1 (433-497)||(27140487-27140551)
chr1 (433-492)||(35925704-35925763)
chr1 (433-486)||(26184768-26184821)
chr1 (404-493)||(28689421-28689509)
chr1 (433-522)||(44422684-44422772)
chr1 (433-493)||(3597278-3597338)
chr1 (413-473)||(4549263-4549322)
chr1 (431-503)||(30257686-30257758)
chr1 (394-478)||(31517699-31517782)
chr1 (435-531)||(44031998-44032093)
chr1 (394-497)||(23373272-23373373)
chr1 (433-492)||(37593681-37593740)
chr1 (399-473)||(29007680-29007753)
chr1 (399-428)||(567631-567660)
chr1 (433-502)||(4699612-4699681)
chr1 (433-478)||(11639413-11639458)
chr1 (400-429)||(36495452-36495481)
chr1 (440-481)||(52286703-52286744)
chr1 (435-491)||(6231815-6231871)
chr1 (432-492)||(16981932-16981992)
chr1 (418-470)||(17628635-17628686)
chr1 (393-497)||(33723340-33723443)
chr1 (433-497)||(35017585-35017649)
chr1 (433-489)||(35080066-35080122)
chr1 (439-503)||(39347970-39348034)
chr1 (394-478)||(40485732-40485815)
chr1 (394-466)||(51730525-51730596)
[»] chr2 (35 HSPs)
chr2 (393-478)||(27237851-27237935)
chr2 (433-503)||(35485920-35485990)
chr2 (433-531)||(43141847-43141944)
chr2 (400-497)||(1741997-1742093)
chr2 (433-497)||(1939329-1939393)
chr2 (393-493)||(31228795-31228894)
chr2 (433-497)||(32821818-32821882)
chr2 (433-497)||(34652033-34652097)
chr2 (434-497)||(9530726-9530789)
chr2 (433-491)||(9478314-9478372)
chr2 (413-503)||(16785326-16785415)
chr2 (394-475)||(787363-787443)
chr2 (433-502)||(1810668-1810737)
chr2 (434-503)||(10563556-10563625)
chr2 (401-473)||(11063521-11063592)
chr2 (400-492)||(33192216-33192306)
chr2 (399-478)||(41041986-41042064)
chr2 (434-492)||(1160669-1160727)
chr2 (435-497)||(10198479-10198541)
chr2 (581-623)||(14316970-14317012)
chr2 (405-491)||(15120198-15120283)
chr2 (433-503)||(42381672-42381741)
chr2 (447-497)||(42817387-42817437)
chr2 (436-493)||(3973548-3973605)
chr2 (399-464)||(14316109-14316173)
chr2 (399-452)||(28803494-28803546)
chr2 (404-497)||(41817177-41817269)
chr2 (452-496)||(1741530-1741574)
chr2 (433-473)||(10285893-10285933)
chr2 (433-497)||(12215816-12215880)
chr2 (404-452)||(39962268-39962315)
chr2 (433-497)||(41144219-41144283)
chr2 (433-505)||(43065447-43065519)
chr2 (433-497)||(43985218-43985282)
chr2 (433-493)||(44458335-44458395)
[»] chr7 (21 HSPs)
chr7 (436-503)||(24363601-24363668)
chr7 (399-497)||(4966165-4966262)
chr7 (399-473)||(48157084-48157157)
chr7 (431-503)||(44151475-44151547)
chr7 (435-478)||(27496406-27496449)
chr7 (435-478)||(27503064-27503107)
chr7 (399-490)||(39334209-39334299)
chr7 (419-497)||(9423578-9423655)
chr7 (433-491)||(27626120-27626178)
chr7 (433-478)||(27517853-27517898)
chr7 (434-491)||(33894642-33894699)
chr7 (433-497)||(12234886-12234950)
chr7 (402-462)||(28520979-28521038)
chr7 (393-449)||(29574583-29574638)
chr7 (399-490)||(39345487-39345577)
chr7 (393-463)||(36537951-36538020)
chr7 (441-503)||(40439057-40439119)
chr7 (399-464)||(36598320-36598384)
chr7 (433-497)||(6552289-6552353)
chr7 (401-457)||(30535612-30535667)
chr7 (413-497)||(33645939-33646021)
[»] scaffold0003 (1 HSPs)
scaffold0003 (433-503)||(306329-306399)
[»] scaffold0147 (1 HSPs)
scaffold0147 (413-478)||(12682-12746)
[»] scaffold0311 (1 HSPs)
scaffold0311 (435-475)||(10616-10656)


Alignment Details
Target: chr5 (Bit Score: 644; Significance: 0; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 1 - 692
Target Start/End: Complemental strand, 2468935 - 2468245
Alignment:
Q  1 actcaaatcaaacttatttccagagcttcccctttcatttttatctcatcaataaccaaattcttcaaataaatcttaacagaaaggaggttattgtttt 100  Q
    |||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2468935 actcaaatcaaacttatttcaacagcttcccccttcatttttatctcatcaataaccaaattcttcaaataaatcttaacagaaaggaggttattgtttt 2468836  T
Q  101 ttaatatcacagtttcatttcttcattgttttgtatttggtttgaaaagaatgaaaatgagaaaaatatcacaataacaagtgatttatgtgcactcact 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2468835 ttaatatcacagtttgatttcttcattgttttgtatttggtttgaaaagaatgaaaatgagaaaaatatcacaataacaagtgatttatgtgcactcact 2468736  T
Q  201 gcaatgaaaaaagtcttgtctcccagttcagagaaaaatatcagcaaaaatgcctgtgatagagcataaaacaataagagaacaatattagtctttgaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2468735 gcaatgaaaaaagtcttgtctcccagttcagagaaaaatatcagcaaaaatgcctgtgatagagcataaaacaataagagaacaatattagtctttgaat 2468636  T
Q  301 atcaagatagtcaaatcaaaatagtctttagttataatggcaaaagtatacaacagtttcctcactagggtctgtttgtattgacttaatcgacactagt 400  Q
    ||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2468635 atcaatatagtcaaatcaaaatagtctt-acttataatggcaaaagtatacaacagtttcctcattagggtctgtttgtattgacttaatcgacactagt 2468537  T
Q  401 gagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2468536 gagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaa 2468437  T
Q  501 ctttacagcttttatgaaaacaaattgacttgttatataaaaaacacttatacatatccaatccatgtatatgatgagcattatgctataagcgcttaat 600  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2468436 ctttacagcttttatgaaaacaaattgacttgttatataaataacacttatacatatccaatccatgtatatgatgagcattatgctataagcgcttaat 2468337  T
Q  601 taaagtgtatatccaaacaagacctaattaaatgaccccaactacagcagaaataacaaactaacagagttgacattttcatttgtaataat 692  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2468336 taaagtgtatatccaaacaagacctaaataaatgaccgcaactacagcagaaataacaaactaacagagttgacattttcatttgtaataat 2468245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 393 - 456
Target Start/End: Complemental strand, 11457210 - 11457148
Alignment:
Q  393 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttt 456  Q
    ||||| |||||||||||||| ||| |||||||||||||  ||||||||||||||||||||||||    
T  11457210 acacttgtgagactgttttgaagagcttatggaaacaa-cttatgacatgtccataagctgttt 11457148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 503
Target Start/End: Original strand, 2880506 - 2880614
Alignment:
Q  395 actagtgagactgttttggagaa-cttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 493  Q
    |||||||| ||||||| |||| | ||||||||||||  |  |||| |||| |||||| |||||| |||||| ||||||||||||||| | ||||||||||    
T  2880506 actagtgaaactgtttgggaggagcttatggaaacagcta-atgatatgttcataaggtgttttcagcttatttccataaactcttctgaatagcttata 2880604  T
Q  494 aaaagaactt 503  Q
    |||| |||||    
T  2880605 aaaacaactt 2880614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 394 - 531
Target Start/End: Complemental strand, 32172764 - 32172629
Alignment:
Q  394 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 493  Q
    |||| ||||||  |||| ||||| ||||||||||||| || |||||||||||||||||  |||| |||||| |||||| |  |||||| ||||||||||     
T  32172764 cacttgtgagatagtttgggagagcttatggaaacaactt-atgacatgtccataagccattttcagcttatttccattagttcttcatgatagcttatg 32172666  T
Q  494 aaaagaactttacagcttttatgaaaacaaattgactt 531  Q
    |||| | | ||| ||||| |||| |||||| |||||||    
T  32172665 aaaacagc-ttatagcttatatgtaaacaacttgactt 32172629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 17258880 - 17258944
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||||| ||||||||||||| |||||| || ||||| ||||||||||||| |||| ||||    
T  17258880 ttatgacatgttcataagctgttttcagcttattttcataagctcttcaggatagtttatgaaaa 17258944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 503
Target Start/End: Original strand, 5284437 - 5284515
Alignment:
Q  425 aaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    |||||| ||||||||||||||||||||| |||| |||||| || ||| | ||||||| |||||| ||| |||| |||||    
T  5284437 aaacaactttatgacatgtccataagcttttttcagcttattttcattagctcttcatgatagcctatgaaaacaactt 5284515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 503
Target Start/End: Complemental strand, 17368768 - 17368679
Alignment:
Q  413 gagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    ||||||||||| |||||| || ||||||||| |||| || ||||| |||||| |||||||| |||| || |||||||||| |||| |||||    
T  17368768 gagaacttatgaaaacaactt-atgacatgttcatatgcagttttcagcttatttccataacctctccaagatagcttatgaaaacaactt 17368679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 433 - 503
Target Start/End: Original strand, 40205071 - 40205141
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    |||| |||||||||||| ||||||| |||||| ||| |||| |||| ||||||||||||| |||| |||||    
T  40205071 ttataacatgtccataatctgttttcagcttatttctataagctctccaggatagcttatgaaaacaactt 40205141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 478
Target Start/End: Original strand, 11700337 - 11700420
Alignment:
Q  394 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactct 478  Q
    |||| |||||||| ||  |||||  |||||||||||| || ||||||||||||||||||||||| || ||| || ||||||||||    
T  11700337 cacttgtgagactattgaggagagtttatggaaacaactt-atgacatgtccataagctgttttcagattattttcataaactct 11700420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 493
Target Start/End: Complemental strand, 12521601 - 12521541
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 493  Q
    |||||| |||| ||||||||||||| |||||| |||||||| |||||||  ||||||||||    
T  12521601 ttatgatatgttcataagctgttttcagcttatttccataagctcttcaaaatagcttata 12521541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 32408589 - 32408653
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||||||| |||| || |||  ||||| |||||||| |||||||||||||||||| ||||    
T  32408589 ttatgacatgtccgtaagttggtttctgcttatttccataagctcttcaggatagcttatgaaaa 32408653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 36774704 - 36774768
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||||||||  ||| || ||| |||||| |||||||| |||| ||||||||||||||||||    
T  36774704 ttatgacatgtcctaaagatggtttcagcttatttccataagctctccaggatagcttataaaaa 36774768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 492
Target Start/End: Complemental strand, 985686 - 985627
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    |||||||||||||| |||| ||||| |||||| |||||||  ||||||| ||||||||||    
T  985686 ttatgacatgtccacaagcggttttcagcttatttccatagtctcttcatgatagcttat 985627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 503
Target Start/End: Complemental strand, 1899227 - 1899157
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    ||||||||||| |||||| |||||| |||||| ||||||||| ||| ||| ||| ||||||| || |||||    
T  1899227 ttatgacatgtgcataagttgttttcagcttatttccataaattctccagtataacttataagaataactt 1899157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 497
Target Start/End: Complemental strand, 7674754 - 7674657
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||| || | ||||||||||||||||| || |||||||||  ||||| |||||| |||||| || || ||| ||| || |||||||||| ||||    
T  7674754 gtgagactgcttggaagaacttatggaaacaactt-atgacatgtttataaggtgttttcagcttattttcacaaattctccaagatagcttatgaaaa 7674657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 531
Target Start/End: Original strand, 10272428 - 10272525
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaacaaattgactt 531  Q
    ||||||||||||  |||| |||||| |||||| || |||||||||| || ||| |||||| |||| ||| ||| ||||| || |||||||| |||||||    
T  10272428 ttatgacatgtctgtaagttgttttcagcttattttcataaactctccaagatggcttatgaaaacaac-ttatagcttatacgaaaacaatttgactt 10272525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 491
Target Start/End: Complemental strand, 14295579 - 14295521
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 491  Q
    |||||| ||||| |||||||||||| |||||||||| | || |||| ||||||||||||    
T  14295579 ttatgatatgtcgataagctgttttcagcttacttctaaaagctctccaggatagctta 14295521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 503
Target Start/End: Original strand, 15074750 - 15074816
Alignment:
Q  437 gacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    ||||||||||||||||||||| |||||| |||||||| || | ||| ||| ||||| |||| |||||    
T  15074750 gacatgtccataagctgttttcagcttatttccataagctttccagtataacttatgaaaacaactt 15074816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 503
Target Start/End: Original strand, 18543194 - 18543263
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    ||||||||||||||| || |||||| |||||| || ||||| |||| ||||||||||||| |||| |||||    
T  18543194 ttatgacatgtccatgagttgttttcagctta-tttcataagctctccaggatagcttatgaaaacaactt 18543263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 503
Target Start/End: Complemental strand, 28982083 - 28982013
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    |||||||||||  |||||||||||| ||  || |||||||| |||| |||| ||||||||||||| |||||    
T  28982083 ttatgacatgtaaataagctgttttcagtctaattccataagctctccagggtagcttataaaaacaactt 28982013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 619
Target Start/End: Original strand, 29115364 - 29115402
Alignment:
Q  581 ttatgctataagcgcttaattaaagtgtatatccaaaca 619  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  29115364 ttatgctataagcgcgtaattaaagtgtttatccaaaca 29115402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 394 - 492
Target Start/End: Complemental strand, 30217192 - 30217096
Alignment:
Q  394 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    |||| |||||||||||| ||||| |||||||||  | | ||||| |||||||||||| ||||||  | ||| |||||||| |||| |||||||||||||    
T  30217192 cacttgtgagactgtttaggagagcttatggaatta-tcttatg-catgtccataagttgttttaggtttatttccataagctctccaggatagcttat 30217096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 497
Target Start/End: Original strand, 37611179 - 37611276
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||| |||||  |||| |||||| |||||| ||  |||||||| ||||||||||||| || ||| |||||||| |||| || |||||||||| ||||    
T  37611179 gtgagattgtttgagagagcttatgaaaacaacttg-tgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaa 37611276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 497
Target Start/End: Original strand, 37787909 - 37788006
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||| |||||  |||| |||||| |||||| ||  |||||||| ||||||||||||| || ||| |||||||| |||| || |||||||||| ||||    
T  37787909 gtgagattgtttgagagagcttatgaaaacaacttg-tgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaa 37788006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 470
Target Start/End: Complemental strand, 6109595 - 6109519
Alignment:
Q  393 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttcca 470  Q
    ||||| |||||| | ||||||||| |||||||||| || || |||| ||||||||||| |||||| |||||| |||||    
T  6109595 acacttgtgagaatattttggagagcttatggaaaaaaatt-atgatatgtccataagttgttttcagcttatttcca 6109519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 492
Target Start/End: Original strand, 36542266 - 36542338
Alignment:
Q  419 ttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    ||||||||||| | |||||||||||||| |||||||||| | |||| ||||| || ||||  ||||||||||||    
T  36542266 ttatggaaaca-tcttatgacatgtccagaagctgtttttaacttatttccacaagctctctaggatagcttat 36542338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 452
Target Start/End: Original strand, 38047847 - 38047895
Alignment:
Q  403 gactgttttggagaacttatggaaacaattttatgacatgtccataagct 452  Q
    |||||||| ||||| |||||||||||||  ||||||||||||||||||||    
T  38047847 gactgtttgggagagcttatggaaacaa-cttatgacatgtccataagct 38047895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 445 - 497
Target Start/End: Original strand, 10798421 - 10798473
Alignment:
Q  445 cataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||| |||||||| || ||| |||||| | |||||||||||||||||||||||    
T  10798421 cataggctgttttcagattatttccatcagctcttcaggatagcttataaaaa 10798473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 12242707 - 12242771
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||||  ||| || |||||| ||||||||||||||| |||| || |||||||||| ||||    
T  12242707 ttatgacatgaacattagttgttttcagcttacttccataagctctccaagatagcttatgaaaa 12242771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 440 - 492
Target Start/End: Original strand, 28413288 - 28413340
Alignment:
Q  440 atgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    |||| ||||||||||||| |||||| ||||||||||||| || |||| |||||    
T  28413288 atgttcataagctgttttcagcttatttccataaactctccaagataacttat 28413340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 443 - 523
Target Start/End: Complemental strand, 29588942 - 29588863
Alignment:
Q  443 tccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaacaa 523  Q
    |||||| ||| |||| |||||| ||||||||||||||||  ||||||||  ||||  |||||| ||||| |||||||||||    
T  29588942 tccataggctattttcagcttatttccataaactcttcaacatagcttacgaaaa-cactttatagcttatatgaaaacaa 29588863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 473
Target Start/End: Original strand, 37794695 - 37794735
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataa 473  Q
    ||||||||||| |||||||||||||||||||| ||| ||||    
T  37794695 ttatgacatgttcataagctgttttgagcttatttcgataa 37794735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 581 - 621
Target Start/End: Original strand, 39257537 - 39257577
Alignment:
Q  581 ttatgctataagcgcttaattaaagtgtatatccaaacaag 621  Q
    |||||||||||||||||||||||  ||| ||||||||||||    
T  39257537 ttatgctataagcgcttaattaagttgtttatccaaacaag 39257577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 399 - 499
Target Start/End: Complemental strand, 14949972 - 14949873
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaag 498  Q
    |||||||||||| ||||| |||||| ||| || || ||||||||||||||||||||||| |||||| ||| |||| ||||| |||||||||||| |||||    
T  14949972 gtgagactgtttaggagagcttatgaaaataactt-atgacatgtccataagctgttttcagcttatttctataatctctttaggatagcttatgaaaag 14949874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 400 - 531
Target Start/End: Complemental strand, 5088957 - 5088824
Alignment:
Q  400 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaaga 499  Q
    ||||||||| ||||||| |||||||||||| ||| || |||||||||||||||||||| | |||| ||| |||| |||| |||||| |||| | |||| |    
T  5088957 tgagactgtcttggagagcttatggaaacagttt-ataacatgtccataagctgttttcaacttatttcaataagctctccaggatcgcttgtgaaaaca 5088859  T
Q  500 actt---tacagcttttatgaaaacaaattgactt 531  Q
    ||||   || ||||| |||||||| || |||||||    
T  5088858 acttatatatagcttatatgaaaataatttgactt 5088824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 393 - 497
Target Start/End: Original strand, 11813063 - 11813166
Alignment:
Q  393 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    ||||| |||| ||||| | ||||||||||||||||||| |||||||||| |||||| |||||||| |||||| |||  ||| ||||| | ||||||||||    
T  11813063 acactcgtgaaactgtatgggagaacttatggaaacaa-tttatgacatatccataggctgttttcagcttatttctgtaagctcttgaagatagcttat 11813161  T
Q  493 aaaaa 497  Q
     ||||    
T  11813162 gaaaa 11813166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 20672823 - 20672759
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||||| ||||||||||||| |||||| || ||||| |||| ||||||||||||||||||    
T  20672823 ttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttataaaaa 20672759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 402 - 497
Target Start/End: Original strand, 30191108 - 30191202
Alignment:
Q  402 agactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||| ||||| ||||||||||||| || ||||||||| || ||  |||||| |||||| ||||||||||  ||||||||||||||| ||||    
T  30191108 agactgtttgggagagcttatggaaacaactt-atgacatgttcaaaacttgttttcagcttatttccataaacatttcaggatagcttatcaaaa 30191202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 34849209 - 34849136
Alignment:
Q  400 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataa 473  Q
    ||||||||||| |||||||| ||| |||||| |||||||||||| ||||||| ||||| |||| | ||||||||    
T  34849209 tgagactgtttgggagaactaatgaaaacaactttatgacatgttcataagccgttttcagctgatttccataa 34849136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 25869263 - 25869327
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||||||||||||| |||||| |||||| ||||||||||||| || |||||| ||| ||||    
T  25869263 ttatgacatgtccataagttgttttcagcttatttccataaactctccatgatagcctatgaaaa 25869327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 503
Target Start/End: Original strand, 39551173 - 39551276
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaag 498  Q
    |||| ||||||| |||||| |||||||||||| || |||||||||||| |||||||||| | |||| ||  |||| |||| ||||| ||||||| ||||     
T  39551173 gtgaaactgtttgggagaatttatggaaacaactt-atgacatgtccaaaagctgtttttaacttatttttataagctctccaggaaagcttatgaaaac 39551271  T
Q  499 aactt 503  Q
    |||||    
T  39551272 aactt 39551276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 433 - 496
Target Start/End: Complemental strand, 3254298 - 3254235
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaa 496  Q
    ||||||||||| ||||||||||||| |||||| ||| ||| |||||  ||||||||||||||||    
T  3254298 ttatgacatgttcataagctgttttcagcttatttctatacactctataggatagcttataaaa 3254235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 434 - 492
Target Start/End: Original strand, 42370359 - 42370417
Alignment:
Q  434 tatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    ||||||||||| | || ||||||| |||||| |||||||||||||||| ||||||||||    
T  42370359 tatgacatgtctacaaactgttttcagcttatttccataaactcttcatgatagcttat 42370417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 412 - 493
Target Start/End: Original strand, 10062118 - 10062198
Alignment:
Q  412 ggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 493  Q
    ||||| ||||||| |||| ||||||||||| || |||||||||||| |||||| || |||||||||   |||||||||||||    
T  10062118 ggagagcttatggcaaca-ttttatgacatttctataagctgttttcagcttatttgcataaactcacaaggatagcttata 10062198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 29169094 - 29169158
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||| |||| |||||||||| ||||  ||||| ||||||||||||||||||||| |||| |||||    
T  29169094 ttataacatatccataagctattttcggcttatttccataaactcttcaggataacttacaaaaa 29169158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 497
Target Start/End: Original strand, 30277246 - 30277306
Alignment:
Q  437 gacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||| ||||||| |||||| |||||| |||||||||||||  |||||||||||| ||||    
T  30277246 gacatggccataagttgttttcagcttatttccataaactctctaggatagcttatgaaaa 30277306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 33553313 - 33553249
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||||||| |||||||||   |||||| |||||||| ||||||| |||||||||| ||||    
T  33553313 ttatgacatgtccctaagctgttcccagcttatttccataagctcttcaagatagcttatgaaaa 33553249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 486
Target Start/End: Complemental strand, 6950428 - 6950342
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggata 486  Q
    |||||| ||||| ||||| |||||| ||||||  | |||||||||| ||||| |||||| |||||| |||||||| ||||| ||||||    
T  6950428 gtgagattgtttgggagagcttatgtaaacaacct-atgacatgtcgataagttgttttcagcttatttccataagctctttaggata 6950342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 497
Target Start/End: Original strand, 11569416 - 11569518
Alignment:
Q  394 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 493  Q
    |||| ||||||||||||  |||| ||||||||||||  || ||||||||| |||||| |||||| |||||| || || || |||| || ||||||||||     
T  11569416 cacttgtgagactgtttaagagagcttatggaaacagctt-atgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttatg 11569514  T
Q  494 aaaa 497  Q
    ||||    
T  11569515 aaaa 11569518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 492
Target Start/End: Complemental strand, 11795165 - 11795106
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    ||||||||||||||||| ||||||| |||||| |||||||| |||| ||  |||||||||    
T  11795165 ttatgacatgtccataacctgttttcagcttatttccataagctctccataatagcttat 11795106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 434 - 497
Target Start/End: Original strand, 28769337 - 28769400
Alignment:
Q  434 tatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||| ||||||||||| |||||| |||||| ||||||||||||| ||  ||||||||| ||||    
T  28769337 tatgatatgtccataagttgttttcagcttatttccataaactctccaaaatagcttatgaaaa 28769400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 497
Target Start/End: Original strand, 42215269 - 42215367
Alignment:
Q  398 agtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||| ||||||| |||||||| ||| |||||  || ||||| ||| ||||||||||||| |||||| || ||||| |||| ||||||||| ||| ||||    
T  42215269 agtgacactgtttgggagaactaatgaaaacagctt-atgacttgttcataagctgttttcagcttatttacataagctctccaggatagcatatgaaaa 42215367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 497
Target Start/End: Complemental strand, 43504862 - 43504760
Alignment:
Q  394 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 493  Q
    |||| ||| |||||||| |||||||| ||| |||||| || | ||| |||  |||||||||||| |||||| ||||||||  ||| || |||||||||||    
T  43504862 cacttgtgtgactgtttcggagaactgatgaaaacaactt-acgacttgtttataagctgttttcagcttatttccataagttctccaagatagcttata 43504764  T
Q  494 aaaa 497  Q
    ||||    
T  43504763 aaaa 43504760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 531
Target Start/End: Complemental strand, 12361265 - 12361168
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaacaaattgactt 531  Q
    ||||||||||||||||||||||||| | |||| |||||| | |||| | | ||| ||||| |||| | | ||| ||||| ||||||||||| |||||||    
T  12361265 ttatgacatgtccataagctgttttcaacttatttccattagctctcctgaataacttatgaaaacagc-ttatagcttatatgaaaacaatttgactt 12361168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 484
Target Start/End: Original strand, 29589949 - 29590013
Alignment:
Q  418 cttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcagga 484  Q
    |||||| |||||||||| | || ||||||||||||||||| |||||| ||||||||||||| |||||    
T  29589949 cttatgcaaacaatttt-tcacctgtccataagctgttttcagctta-ttccataaactctccagga 29590013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 29890844 - 29890901
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgtttt 457  Q
    |||||||||||| | |||  |||||||||||||||| ||||| ||||||||||||||||    
T  29890844 gtgagactgtttggtagagtttatggaaacaatttt-tgacaagtccataagctgtttt 29890901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 503
Target Start/End: Complemental strand, 38421337 - 38421267
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    |||||||||||||||||| |||||| ||||||||| || ||  |||||| |||||||| | |||| |||||    
T  38421337 ttatgacatgtccataagttgttttcagcttacttacacaagatcttcaagatagcttttgaaaacaactt 38421267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 439 - 493
Target Start/End: Original strand, 39866737 - 39866791
Alignment:
Q  439 catgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 493  Q
    ||||||||||||||||||| || ||| || ||||| ||||||| |||||||||||    
T  39866737 catgtccataagctgttttcagtttattttcataagctcttcaagatagcttata 39866791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 465
Target Start/End: Original strand, 41442417 - 41442482
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttac 465  Q
    ||||||||||||   |||||||||| ||||||||| ||||||||| |||| |||||||| |||||||    
T  41442417 gtgagactgtttgacagaacttatgaaaacaattt-atgacatgttcatatgctgttttcagcttac 41442482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 490
Target Start/End: Complemental strand, 11183618 - 11183561
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctt 490  Q
    |||||| ||||| |||||||||||| |||||| |||||||| |||| |||| ||||||    
T  11183618 ttatgatatgtctataagctgttttcagcttatttccataagctctccagggtagctt 11183561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 440 - 497
Target Start/End: Complemental strand, 31705151 - 31705094
Alignment:
Q  440 atgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||| ||||||||||||| |||||| |||||||||||||  |||| ||||||| ||||    
T  31705151 atgtgcataagctgttttcagcttatttccataaactctcaaggacagcttatgaaaa 31705094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 408 - 492
Target Start/End: Original strand, 2458539 - 2458622
Alignment:
Q  408 ttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    |||||||||||||||| | |||  || ||| ||||| ||||||||||||| || ||| |||||||| ||||  ||||||||||||    
T  2458539 ttttggagaacttatgaagacagctt-atggcatgttcataagctgttttcagtttatttccataagctctctaggatagcttat 2458622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 395 - 471
Target Start/End: Complemental strand, 10722734 - 10722659
Alignment:
Q  395 actagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccat 471  Q
    |||||||||| ||||| |||||| |||||||||| |  ||||||||| |||||| | |||||| |||||| ||||||    
T  10722734 actagtgagattgtttgggagaatttatggaaac-agcttatgacatctccataggttgtttttagcttatttccat 10722659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 399 - 478
Target Start/End: Complemental strand, 21130718 - 21130642
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactct 478  Q
    ||||||||||||  |||| |||||||||| |  ||| ||||||||||||  ||||||||||||||| |||||||| ||||    
T  21130718 gtgagactgtttgagagagcttatggaaatagcttt-tgacatgtccat--gctgttttgagcttatttccataagctct 21130642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 399 - 492
Target Start/End: Complemental strand, 34939850 - 34939758
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    |||| ||||||||||||| |||| |||||||  || |||||||||||||||  |||||| |||||| ||||||||||||| |||||||||||||    
T  34939850 gtgaaactgttttggagagcttacggaaacagctt-atgacatgtccataaattgttttcagcttatttccataaactctccaggatagcttat 34939758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 394 - 497
Target Start/End: Complemental strand, 32665770 - 32665668
Alignment:
Q  394 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 493  Q
    |||||||||| ||| ||| |||| |||||||||||| |||||||||||| | |||  ||||||| ||| || ||||| |||||||| |||||||||||||    
T  32665770 cactagtgagtctgctttagagatcttatggaaaca-ttttatgacatgcctatagcctgttttcagcatatttccacaaactctttaggatagcttata 32665672  T
Q  494 aaaa 497  Q
    ||||    
T  32665671 aaaa 32665668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 413 - 492
Target Start/End: Complemental strand, 34939605 - 34939527
Alignment:
Q  413 gagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    |||| ||||||||||||| || |||||| |||| |||| |||||| |||||| |||||||| ||||||||||||||||||    
T  34939605 gagagcttatggaaacaactt-atgacacgtccgtaagttgttttcagcttatttccataacctcttcaggatagcttat 34939527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 420 - 497
Target Start/End: Original strand, 27909623 - 27909699
Alignment:
Q  420 tatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||||||| | |||||||||||||||| |||||| |||||| |||||||| |||| ||| | ||||||||||||    
T  27909623 tatggaaacaatat-atgacatgtccataagttgttttcagcttatttccataagctctccagtaaagcttataaaaa 27909699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 531
Target Start/End: Original strand, 281812 - 281942
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaag 498  Q
    |||||||||||| ||||| || |||||| ||| || |||||||||| ||||| |||||| |||||| |||||| | ||||  |||||||||||| || |     
T  281812 gtgagactgtttgggagagctaatggaagcaactt-atgacatgtctataagttgttttcagcttatttccatgagctctctaggatagcttatgaacac 281910  T
Q  499 aactttacagcttttatgaaaacaaattgactt 531  Q
    | | ||| ||||| ||||||||||| |||||||    
T  281911 agc-ttatagcttatatgaaaacaagttgactt 281942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 433 - 493
Target Start/End: Original strand, 32577983 - 32578043
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 493  Q
    ||||||||||||| | ||||||||| |||||| |||||||  |||||||||||||||||||    
T  32577983 ttatgacatgtccttgagctgttttcagcttatttccatatgctcttcaggatagcttata 32578043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 393 - 457
Target Start/End: Complemental strand, 32917309 - 32917246
Alignment:
Q  393 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgtttt 457  Q
    ||||| |||||||||||| ||||| |||||||||||||  |||||||||||||||||||| ||||    
T  32917309 acacttgtgagactgtttgggagagcttatggaaacaa-cttatgacatgtccataagctttttt 32917246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 433 - 491
Target Start/End: Complemental strand, 4420716 - 4420658
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 491  Q
    ||||||||||| ||||||||||||| |||||| |||||||| |||| || |||||||||    
T  4420716 ttatgacatgttcataagctgttttcagcttatttccataagctctccaagatagctta 4420658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 502
Target Start/End: Original strand, 5564125 - 5564194
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaact 502  Q
    |||||||||||||  |||||||||| |||||| || ||||||||||||| || ||||||| |||| ||||    
T  5564125 ttatgacatgtccgaaagctgttttcagcttatttgcataaactcttcaagacagcttatgaaaacaact 5564194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 492
Target Start/End: Complemental strand, 30524026 - 30523951
Alignment:
Q  416 aacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    |||||||| |||||| || ||||||||||||| || || ||| |||||| |||||||| ||||| ||||||||||||    
T  30524026 aacttatgaaaacaaatt-atgacatgtccattagttgcttttagcttatttccataagctctttaggatagcttat 30523951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 472
Target Start/End: Complemental strand, 30784629 - 30784590
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccata 472  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  30784629 ttatgaaatgtccataagctgttttgagcttatttccata 30784590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 467
Target Start/End: Complemental strand, 769250 - 769177
Alignment:
Q  393 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttactt 467  Q
    ||||| |||||||||||| |  ||||||||| ||||| | ||||||||||| ||||||||||||| | |||||||    
T  769250 acacttgtgagactgtttggatgaacttatgaaaaca-tcttatgacatgttcataagctgttttcaacttactt 769177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 491
Target Start/End: Original strand, 3168258 - 3168316
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 491  Q
    |||||||||||||||  |||||||| |||||| |||| ||| |||| ||||||||||||    
T  3168258 ttatgacatgtccatcggctgttttcagcttatttccttaagctctccaggatagctta 3168316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 503
Target Start/End: Complemental strand, 9732549 - 9732479
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    |||| |||||||||||| ||||||| |||||||||| |||||||||  |||||| ||| | |||| |||||    
T  9732549 ttataacatgtccataaactgttttcagcttacttctataaactctcaaggataacttgtgaaaacaactt 9732479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 497
Target Start/End: Complemental strand, 31583750 - 31583688
Alignment:
Q  435 atgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||||||||||| |||||| | |||| |||||||| || ||| ||||||||||| ||||    
T  31583750 atgacatgtccataagttgttttcaacttatttccataagcttttcgggatagcttatgaaaa 31583688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 619
Target Start/End: Original strand, 2034582 - 2034631
Alignment:
Q  570 tatgatgagcattatgctataagcgcttaattaaagtgtatatccaaaca 619  Q
    |||||| ||| |||||||||||||||||||| ||| ||| ||||||||||    
T  2034582 tatgataagcgttatgctataagcgcttaatgaaattgtttatccaaaca 2034631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 503
Target Start/End: Complemental strand, 2117490 - 2117406
Alignment:
Q  418 cttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    ||||| |||||||||| ||| |||||| |||||||||||| |||||| ||| |||| ||||  |||||| ||||| |||| |||||    
T  2117490 cttatagaaacaattt-atggcatgtctataagctgtttttagcttatttcaataagctctctaggataacttatgaaaacaactt 2117406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 496
Target Start/End: Original strand, 2460115 - 2460211
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaa 496  Q
    ||||||||||||  |||| |||||||||||||  ||||||||||||  |||| |||||| | |||| |||||||| |||| ||  |||||||| ||||    
T  2460115 gtgagactgtttgagagagcttatggaaacaa-cttatgacatgtctttaagttgttttcaacttatttccataagctctccataatagcttacaaaa 2460211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 482
Target Start/End: Complemental strand, 6537020 - 6536971
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcag 482  Q
    ||||||||||| |||||| |||||| |||||| |||||||| ||||||||    
T  6537020 ttatgacatgttcataagttgttttcagcttatttccataagctcttcag 6536971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 478
Target Start/End: Original strand, 9667982 - 9668027
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactct 478  Q
    ||||||||||||||||||||||||| | |||| |||||||| ||||    
T  9667982 ttatgacatgtccataagctgttttcaacttatttccataagctct 9668027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 490
Target Start/End: Complemental strand, 13908536 - 13908479
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctt 490  Q
    ||||||||||| | ||||||||||| |||||| || ||||| ||||||| ||||||||    
T  13908536 ttatgacatgttcgtaagctgttttcagcttattttcataagctcttcatgatagctt 13908479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 497
Target Start/End: Original strand, 19275632 - 19275697
Alignment:
Q  432 tttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||||||||| |||||| |||  | ||| |||||||| ||||||| |||||||||| ||||    
T  19275632 tttatgacatgtccacaagctgatttcggtttatttccataagctcttcatgatagcttatgaaaa 19275697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 457
Target Start/End: Original strand, 27595532 - 27595588
Alignment:
Q  400 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgtttt 457  Q
    ||||||||||| |||||| ||||||||||||  ||||||||||| |||||||| ||||    
T  27595532 tgagactgtttgggagaatttatggaaacaa-cttatgacatgttcataagctatttt 27595588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 398 - 497
Target Start/End: Original strand, 2205554 - 2205651
Alignment:
Q  398 agtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||| |||||| |||| |||||||||||||  ||| |||||||  |||| || | || |||||| |||||||| |||| || |||||||||| ||||    
T  2205554 agtgagattgttttagagagcttatggaaacaa--ttaggacatgtttataaactatattcagcttatttccataagctctccaagatagcttatgaaaa 2205651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 3155248 - 3155185
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||||||| |||||||||||| |||||| |||||| | |||| ||||||| ||||| ||||    
T  3155248 ttatgacatgtctataagctgttttcagcttatttccat-agctctccaggatatcttatgaaaa 3155185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 481
Target Start/End: Complemental strand, 30863319 - 30863271
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttca 481  Q
    ||||||||||| |||||| |||||| |||||||||| |||| |||||||    
T  30863319 ttatgacatgtacataagttgttttcagcttacttctataagctcttca 30863271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 399 - 503
Target Start/End: Complemental strand, 32976084 - 32975981
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaag 498  Q
    |||||||||||| | ||| ||||| ||||||  || ||||||| ||||||||||||||| ||| | |||| |||| |  | ||||||||||||| ||||     
T  32976084 gtgagactgtttggaagagcttatagaaacagctt-atgacatttccataagctgttttcagcgtgcttctataatcattccaggatagcttatgaaaac 32975986  T
Q  499 aactt 503  Q
    |||||    
T  32975985 aactt 32975981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 393 - 497
Target Start/End: Complemental strand, 34403967 - 34403864
Alignment:
Q  393 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    ||||| || ||||||||| |||||| ||| | |||||| || ||||||||| |||||| |||||| | |||| |||||||| ||||| || | |||||||    
T  34403967 acacttgttagactgtttaggagaagttaagaaaacaactt-atgacatgttcataaggtgttttcaccttatttccataagctctttagtacagcttat 34403869  T
Q  493 aaaaa 497  Q
     ||||    
T  34403868 gaaaa 34403864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 393 - 497
Target Start/End: Original strand, 159931 - 160034
Alignment:
Q  393 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    ||||| |||| ||| |||||||||||| ||||||||| ||| |||||||||| |||||| ||||| |||||| ||||| || ||||| ||||||||||||    
T  159931 acacttgtgaaactattttggagaactaatggaaacagttt-atgacatgtctataagcagttttcagcttatttccacaagctctttaggatagcttat 160029  T
Q  493 aaaaa 497  Q
     ||||    
T  160030 gaaaa 160034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 404 - 503
Target Start/End: Original strand, 6978931 - 6979029
Alignment:
Q  404 actgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    ||||||| | ||||||||| |||| || || |||||||||| |||||||||||| |||||| || ||||||||||| ||||| ||||||||||| |||||    
T  6978931 actgtttggcagaacttattgaaataactt-atgacatgtctataagctgttttcagcttattttcataaactctttaggatggcttataaaaacaactt 6979029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 400 - 503
Target Start/End: Complemental strand, 42866173 - 42866071
Alignment:
Q  400 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaaga 499  Q
    ||||||| ||| |||||||||||| ||||| || ||||| ||||||||||| || ||| ||||||||||||||| ||||  |||||||||||| |||| |    
T  42866173 tgagactctttgggagaacttatgtaaaca-ttctatgatatgtccataagatgcttttagcttacttccataagctctcaaggatagcttatgaaaaca 42866075  T
Q  500 actt 503  Q
    ||||    
T  42866074 actt 42866071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 399 - 502
Target Start/End: Original strand, 6987705 - 6987807
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaag 498  Q
    |||||||||||| ||||| |||||||| |||| || ||||||||||||||| || |||| | |||| |||||||| |||| ||||||||| || |||||     
T  6987705 gtgagactgtttgggagagcttatggatacaactt-atgacatgtccataaactattttcaacttatttccataagctctccaggatagcgtaaaaaaat 6987803  T
Q  499 aact 502  Q
    ||||    
T  6987804 aact 6987807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 433 - 487
Target Start/End: Original strand, 29467621 - 29467675
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatag 487  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||  |||||||    
T  29467621 ttatgacatgtccataagctgttttcagcttatttccataaactctctaggatag 29467675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 55547041 - 55547105
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||||||| ||||| |||||| |||||| ||||||||||| ||||| ||||||||| ||||    
T  55547041 ttatgacatgtctataagttgtttttagcttatttccataaacttttcagcatagcttatgaaaa 55547105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 4798566 - 4798633
Alignment:
Q  436 tgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    |||||||| |||||||||||||||||||| || ||||| |||| || |||||||||| |||| |||||    
T  4798566 tgacatgtacataagctgttttgagcttatttgcataagctctccaagatagcttatgaaaacaactt 4798633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 435 - 497
Target Start/End: Original strand, 7694009 - 7694071
Alignment:
Q  435 atgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||| |||||| |||||| |||||| ||||||||||||| ||||||| ||||| ||||    
T  7694009 atgacatgttcataagttgttttcagcttatttccataaactctccaggataacttatgaaaa 7694071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 393 - 478
Target Start/End: Complemental strand, 1137824 - 1137740
Alignment:
Q  393 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactct 478  Q
    ||||| |||| ||||||| |||||||||||| ||||| | ||||||||||| |||||| |||||| || ||| |||||||| ||||    
T  1137824 acacttgtgacactgtttaggagaacttatgaaaaca-tcttatgacatgttcataagttgttttcagtttatttccataagctct 1137740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 19429771 - 19429722
Alignment:
Q  444 ccataagctgttttgagcttacttccataaactcttcaggatagcttata 493  Q
    |||||||||||||| |||||| |||||||| |||| ||||||||||||||    
T  19429771 ccataagctgttttcagcttatttccataagctctccaggatagcttata 19429722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 393 - 470
Target Start/End: Original strand, 50799988 - 50800064
Alignment:
Q  393 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttcca 470  Q
    ||||| |||||| ||||| |||||||| ||| |||||| || |||||||||| |||||||||||| |||||| |||||    
T  50799988 acacttgtgagattgtttgggagaactaatgtaaacaactt-atgacatgtctataagctgttttcagcttatttcca 50800064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 503
Target Start/End: Complemental strand, 11264407 - 11264304
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaag 498  Q
    |||||||||||| ||||| | ||| ||| ||| || ||||||||||||||| ||||||| | |||| |||||||| ||||  ||||| |||||| ||||     
T  11264407 gtgagactgtttgggagagcatatagaatcaactt-atgacatgtccataaactgttttcaacttatttccataagctctctaggatggcttatgaaaac 11264309  T
Q  499 aactt 503  Q
    |||||    
T  11264308 aactt 11264304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 19304999 - 19304935
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||||||||||||| |||||| |||||  |||||| |||||| ||  ||||||||||||||    
T  19304999 ttatgacatgtccataagttgttttcagcttgtttccattaactctccaaaatagcttataaaaa 19304935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 387 - 487
Target Start/End: Original strand, 20936181 - 20936280
Alignment:
Q  387 taatcgacactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggata 486  Q
    ||||| ||||| |||| ||||||| | | |||||||| |||||| || |||| |||| ||||||||||||| | |||| |||||||| |||| |||||||    
T  20936181 taatctacacttgtgacactgtttcgtaaaacttatgaaaacaactt-atgatatgttcataagctgttttcaccttatttccataatctctccaggata 20936279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 21157841 - 21157777
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||| | || |||||||||| |||||| |||||||| |||||||||||||| ||| ||||    
T  21157841 ttatgacatttacaaaagctgtttttagcttatttccataagctcttcaggatagcatatgaaaa 21157777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 23819162 - 23819098
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||||||||||||| |||||| | |||| ||| |||| ||||||| |||||||||| ||||    
T  23819162 ttatgacatgtccataagttgttttcatcttatttctataagctcttcaagatagcttatgaaaa 23819098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 404 - 464
Target Start/End: Complemental strand, 25571361 - 25571302
Alignment:
Q  404 actgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagctta 464  Q
    ||||||| ||||||||||||||||| | ||||||| |||| ||||||||||||| ||||||    
T  25571361 actgtttaggagaacttatggaaac-agtttatgatatgttcataagctgttttcagctta 25571302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 492
Target Start/End: Original strand, 28614781 - 28614864
Alignment:
Q  408 ttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    ||||| ||| |||||||||||||||| ||||||| |||||||||| |||| |||||| || |||||  |||  ||||||||||||    
T  28614781 ttttgaagagcttatggaaacaattt-atgacatatccataagctcttttcagcttattttcataagttctctaggatagcttat 28614864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 503
Target Start/End: Complemental strand, 2996678 - 2996576
Alignment:
Q  400 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaaga 499  Q
    |||||||||||  |||| |||||| |||||| || |||||||||||||||||| |||| | |||| || ||||  |||| || |||||||||| |||| |    
T  2996678 tgagactgtttgagagagcttatgaaaacaactt-atgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaaca 2996580  T
Q  500 actt 503  Q
    ||||    
T  2996579 actt 2996576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 531
Target Start/End: Original strand, 54325033 - 54325131
Alignment:
Q  432 tttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaacaaattgactt 531  Q
    ||||||| |||||||||||||||||| || |||  |||||||||||| || |||||||| | |||| | | ||| ||||| ||||||||||  |||||||    
T  54325033 tttatgatatgtccataagctgttttcagtttatctccataaactctccatgatagcttttgaaaatagc-ttatagcttatatgaaaacagtttgactt 54325131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 414 - 492
Target Start/End: Original strand, 2874603 - 2874680
Alignment:
Q  414 agaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    ||||||||||||||||| || ||||||||||||||| || ||||  ||||| |||||||| | || | |||||||||||    
T  2874603 agaacttatggaaacaactt-atgacatgtccataatctattttccgcttatttccataagcactcctggatagcttat 2874680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 440 - 490
Target Start/End: Original strand, 5131254 - 5131304
Alignment:
Q  440 atgtccataagctgttttgagcttacttccataaactcttcaggatagctt 490  Q
    ||||||||||| |||||| |||||| |||||||| |||| |||||||||||    
T  5131254 atgtccataagttgttttcagcttatttccataagctctccaggatagctt 5131304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 497
Target Start/End: Original strand, 21043199 - 21043296
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||||||| |||||  |||||||||||  || |||||| || ||||||||||||| ||  || || ||||  |||||||||||||||||| ||||    
T  21043199 gtgagactgtttgggagaggttatggaaacagctt-atgacacgttcataagctgttttcagtgtattttcatatgctcttcaggatagcttatgaaaa 21043296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 416 - 503
Target Start/End: Original strand, 24370932 - 24371020
Alignment:
Q  416 aacttatggaaacaattttatgacatgtc--cataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    ||||||||||||||| || |||||||||   ||||||| ||||| |||||| ||| ||||||| || |||||||||||| |||| |||||    
T  24370932 aacttatggaaacaactt-atgacatgtatacataagccgttttcagcttatttctataaactatttaggatagcttatgaaaacaactt 24371020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 503
Target Start/End: Complemental strand, 29263443 - 29263373
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    |||||| |||| |||||| |||||| |||||| ||||| || |||| ||||||||||||| |||| |||||    
T  29263443 ttatgatatgttcataagttgttttcagcttatttccacaagctctgcaggatagcttatgaaaacaactt 29263373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 419 - 497
Target Start/End: Original strand, 34398668 - 34398746
Alignment:
Q  419 ttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||| ||  ||||||||||| ||||||| ||||||  |||||||||||||| |||| || ||| |||||| ||||    
T  34398668 ttatggaagcagctttatgacatgcccataagttgttttcggcttacttccataagctctccatgatggcttatgaaaa 34398746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 440 - 486
Target Start/End: Complemental strand, 35406013 - 35405967
Alignment:
Q  440 atgtccataagctgttttgagcttacttccataaactcttcaggata 486  Q
    |||| ||||||||||||| ||||||||||||||| |||| |||||||    
T  35406013 atgttcataagctgttttcagcttacttccataagctctccaggata 35405967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 492
Target Start/End: Complemental strand, 7063598 - 7063506
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    ||||||||||||  |||| ||||||| ||||| |||||||||| |||||||||| |||| |||||  |||  ||| ||  ||||||||||||||    
T  7063598 gtgagactgtttaagagatcttatgggaacaa-tttatgacatttccataagctattttcagcttttttctttaagcttgtcaggatagcttat 7063506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 452
Target Start/End: Complemental strand, 7730706 - 7730654
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagct 452  Q
    |||||||| ||||||||| |||| |||||||| || ||||||||||||||||||    
T  7730706 gtgagactattttggagagcttaaggaaacaactt-atgacatgtccataagct 7730654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 493
Target Start/End: Complemental strand, 21953041 - 21952961
Alignment:
Q  412 ggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 493  Q
    ||||| |||||||||| || || ||||||||||||||| ||||||| || ||| |||| ||| ||||  |||||||||||||    
T  21953041 ggagagcttatggaaagaactt-atgacatgtccataacctgtttttagtttatttccttaagctctataggatagcttata 21952961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 496
Target Start/End: Original strand, 27123316 - 27123412
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaa 496  Q
    ||||||||||||  |||| |||||||||||||  ||||||||||||  |||| |||||| | |||| |||||||| |||| ||  |||||||| ||||    
T  27123316 gtgagactgtttgagagagcttatggaaacaa-cttatgacatgtctttaagttgttttcaacttatttccataagctctccataatagcttacaaaa 27123412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 399 - 503
Target Start/End: Complemental strand, 1966046 - 1965944
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaag 498  Q
    ||||||||||||| | || |||||| |||||| || ||||||||| ||||||||||||| | |||| ||||| ||  | |  |||||||||||||||||     
T  1966046 gtgagactgttttag-gagcttatgaaaacaactt-atgacatgttcataagctgtttttaacttatttccagaagatttctaggatagcttataaaaat 1965949  T
Q  499 aactt 503  Q
    |||||    
T  1965948 aactt 1965944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 432 - 492
Target Start/End: Complemental strand, 14011308 - 14011248
Alignment:
Q  432 tttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    ||||| |||||||  ||||||||||| |||||| |||||||| |||| || ||||||||||    
T  14011308 tttatcacatgtctttaagctgttttcagcttatttccataagctctccaagatagcttat 14011248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 434 - 522
Target Start/End: Original strand, 30207569 - 30207656
Alignment:
Q  434 tatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaaca 522  Q
    |||||||||||  ||||||||||| |||||| |||||||| ||||  | | |||||||| |||| ||| ||| ||||| ||||||||||    
T  30207569 tatgacatgtctgtaagctgttttcagcttatttccataatctctctaaggtagcttatgaaaacaac-ttatagcttatatgaaaaca 30207656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 442 - 522
Target Start/End: Original strand, 30338597 - 30338677
Alignment:
Q  442 gtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaaca 522  Q
    ||||||||||||||||  ||||| || |||||||||| || || ||||||| ||||  | |||| ||||| ||||||||||    
T  30338597 gtccataagctgttttatgcttattttcataaactctccaagagagcttatgaaaaacagtttatagcttatatgaaaaca 30338677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 394 - 497
Target Start/End: Complemental strand, 37273245 - 37273143
Alignment:
Q  394 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 493  Q
    |||| |||||||||||| ||||| ||||||||||||| || |||||||||||||||| |||||| | |||| ||||||||  ||| || ||||||||||     
T  37273245 cactggtgagactgtttgggagagcttatggaaacaactt-atgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatg 37273147  T
Q  494 aaaa 497  Q
    ||||    
T  37273146 aaaa 37273143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 400 - 497
Target Start/End: Complemental strand, 21574595 - 21574499
Alignment:
Q  400 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||||| ||||| |||||| |||||| || ||||||||| ||||||||| ||| |||||| |||||||| |||| || | |||||||||||||    
T  21574595 tgagactgtttgggagagcttatgaaaacaactt-atgacatgttcataagctgcttttagcttatttccataagctctccatgttagcttataaaaa 21574499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 393 - 463
Target Start/End: Original strand, 49772626 - 49772695
Alignment:
Q  393 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagctt 463  Q
    |||||||||||||||||| ||||| |||||||||||||  |||||| ||||||||||||| |||| |||||    
T  49772626 acactagtgagactgtttaggagagcttatggaaacaa-cttatgagatgtccataagctttttttagctt 49772695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 433 - 494
Target Start/End: Complemental strand, 36200169 - 36200108
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataa 494  Q
    |||||||||||||||||| |||||| |||||| |||||| | |||| |||||||||||||||    
T  36200169 ttatgacatgtccataagttgttttcagcttatttccatgagctctacaggatagcttataa 36200108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 433 - 489
Target Start/End: Original strand, 27290898 - 27290954
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagct 489  Q
    |||||||||| |||||||||||||| |||||| |||||| |||||| ||||||||||    
T  27290898 ttatgacatgcccataagctgttttcagcttatttccatgaactctgcaggatagct 27290954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 402 - 497
Target Start/End: Original strand, 36646349 - 36646443
Alignment:
Q  402 agactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||| ||| ||||| ||||||||||| | || ||| ||||||||||||||||||| | |||| ||| |||||||||  |||||||||||| ||||    
T  36646349 agactatttgggagagcttatggaaaccactt-atggcatgtccataagctgttttcatcttatttctataaactctctaggatagcttatgaaaa 36646443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 418 - 497
Target Start/End: Complemental strand, 37825210 - 37825131
Alignment:
Q  418 cttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||||| |  |||||||||||||||||| |||||| || ||| |||||||| |||| ||||| |||| |||||||    
T  37825210 cttatggaaacgagcttatgacatgtccataagttgttttcaggttatttccataagctctccaggaaagctaataaaaa 37825131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 432 - 503
Target Start/End: Original strand, 40122749 - 40122820
Alignment:
Q  432 tttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    |||||||||| || ||||| |||||| |||||| |||||| |||| || ||||||||||||||||| |||||    
T  40122749 tttatgacatctctataagttgtttttagcttatttccattaactttttaggatagcttataaaaacaactt 40122820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 433 - 523
Target Start/End: Complemental strand, 50952406 - 50952316
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaacaa 523  Q
    ||||||||||| ||||| ||||||| |||||| |||||||| |||| || ||||| |||| | || |||| || ||||| |||||||||||    
T  50952406 ttatgacatgttcataaactgttttaagcttatttccataagctctccaagatagtttattacaacaactatatagcttatatgaaaacaa 50952316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 432 - 497
Target Start/End: Original strand, 13709819 - 13709884
Alignment:
Q  432 tttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||| ||||||||| |||||| || ||| ||| ||||||||| ||||||||||||| ||||    
T  13709819 tttatgacaagtccataagttgttttcagtttatttcaataaactctccaggatagcttatgaaaa 13709884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 457
Target Start/End: Original strand, 24603717 - 24603773
Alignment:
Q  400 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgtttt 457  Q
    ||||||||||| ||||||||||| ||||| | ||||||||||| ||||||||||||||    
T  24603717 tgagactgtttgggagaacttattgaaac-agtttatgacatgcccataagctgtttt 24603773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 478
Target Start/End: Complemental strand, 31010475 - 31010430
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactct 478  Q
    ||||||||||||||||||||||||| |||||| |||||||| ||||    
T  31010475 ttatgacatgtccataagctgttttcagcttaattccataagctct 31010430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 435 - 504
Target Start/End: Original strand, 48048981 - 48049050
Alignment:
Q  435 atgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaacttt 504  Q
    ||||||||||||||||||||||| |||||| |||||||| |||  || ||||||| || |||| ||||||    
T  48048981 atgacatgtccataagctgttttcagcttatttccataacctccccaagatagctaatgaaaacaacttt 48049050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 432 - 484
Target Start/End: Original strand, 1360522 - 1360574
Alignment:
Q  432 tttatgacatgtccataagctgttttgagcttacttccataaactcttcagga 484  Q
    ||||||||||||||||||||| |||| |||||| ||||| |||||||| ||||    
T  1360522 tttatgacatgtccataagctattttcagcttatttccacaaactctttagga 1360574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 481
Target Start/End: Complemental strand, 30750073 - 30750025
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttca 481  Q
    ||||||||||||||||||||||||| || |||  |||||||||||||||    
T  30750073 ttatgacatgtccataagctgttttcagattagatccataaactcttca 30750025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 30923895 - 30923959
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||||||| |||||||||||| |||||| ||| |||||||||  ||||||| |||| ||||    
T  30923895 ttatgacatgtctataagctgttttcagcttatttctataaactctctaggataggttatgaaaa 30923959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 31403220 - 31403156
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||| ||||||||||||||||||| |||||| | |||| ||||||  |||||||||||| ||||    
T  31403220 ttatgtcatgtccataagctgttttcagcttattaccatgaactctctaggatagcttatcaaaa 31403156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 445 - 497
Target Start/End: Original strand, 40608390 - 40608442
Alignment:
Q  445 cataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||||||| |||||||||||||||  ||| |||||||| |||||||||    
T  40608390 cataagctgttttcagcttacttccataagttctccaggatagtttataaaaa 40608442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 22214659 - 22214726
Alignment:
Q  436 tgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    |||||||||||||||||||||| |||||| |||| |||  |||  |||||||||||| |||| |||||    
T  22214659 tgacatgtccataagctgttttcagcttatttccgtaatgtctctaggatagcttatgaaaacaactt 22214726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 497
Target Start/End: Original strand, 39311638 - 39311740
Alignment:
Q  394 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 493  Q
    |||| |||||||| ||||||||| ||||||||||| | ||||||| || |||| ||  | |||| | |||| ||||||||||||| ||| |||||||||     
T  39311638 cacttgtgagactattttggagagcttatggaaac-agtttatgatatttccacaaatttttttcatcttatttccataaactctccagtatagcttatg 39311736  T
Q  494 aaaa 497  Q
    ||||    
T  39311737 aaaa 39311740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 42747745 - 42747804
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgaca-tgtccataagctgtttt 457  Q
    ||||||||||||| ||||||||||| |||||| ||||||||| |||  ||||||||||||    
T  42747745 gtgagactgtttttgagaacttatgaaaacaactttatgacattgtttataagctgtttt 42747804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 473
Target Start/End: Original strand, 11039303 - 11039376
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataa 473  Q
    ||||||||||||   ||| |||||||||||| | |||||||||||||||||| |||||| ||||||  |||||||    
T  11039303 gtgagactgtttgaaagagcttatggaaaca-tattatgacatgtccataagttgttttcagcttatctccataa 11039376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 487
Target Start/End: Complemental strand, 36101641 - 36101587
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatag 487  Q
    ||||||||||| || |||||||||| |||||| || ||||| |||||||||||||    
T  36101641 ttatgacatgttcacaagctgttttcagcttattttcataagctcttcaggatag 36101587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 497
Target Start/End: Original strand, 24887269 - 24887344
Alignment:
Q  420 tatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||||||||| ||||||||||  ||| ||||||| |||||| | |||||| |||| ||||||||||||| ||||    
T  24887269 tatggaaacaattt-atgacatgtcattaa-ctgttttcagcttattcccataagctctccaggatagcttatgaaaa 24887344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 581 - 626
Target Start/End: Original strand, 49587077 - 49587122
Alignment:
Q  581 ttatgctataagcgcttaattaaagtgtatatccaaacaagaccta 626  Q
    |||||||| ||||||||||||||| ||| |||||||||||| ||||    
T  49587077 ttatgctagaagcgcttaattaaactgtttatccaaacaaggccta 49587122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 439 - 503
Target Start/End: Complemental strand, 237464 - 237400
Alignment:
Q  439 catgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    ||||||||||||||||||| |||||| |||| ||| ||||  |||||| ||||| |||| |||||    
T  237464 catgtccataagctgttttcagcttatttccgtaagctctataggataacttatgaaaacaactt 237400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 1217797 - 1217861
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||||||||||||| |||||| | ||||||| |||||  |||  |||||||||||| ||||    
T  1217797 ttatgacatgtccataagttgttttcatcttactttcataagttctcaaggatagcttatgaaaa 1217861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 9279323 - 9279387
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||| ||||||  |||||||||||| |||||| |||| ||||||||||| ||||| |||| ||||    
T  9279323 ttataacatgtatataagctgttttcagcttatttccttaaactcttcatgatagtttatgaaaa 9279387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 24785278 - 24785214
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||||| |||||| |||||| |||||| || ||||| ||||  |||||||||||| ||||    
T  24785278 ttatgacatgttcataagttgtttttagcttatttacataagctctcgaggatagcttatgaaaa 24785214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 416 - 464
Target Start/End: Complemental strand, 41724301 - 41724254
Alignment:
Q  416 aacttatggaaacaattttatgacatgtccataagctgttttgagctta 464  Q
    ||||||||||||||| || |||||||||||||||| |||||| ||||||    
T  41724301 aacttatggaaacaactt-atgacatgtccataagttgttttcagctta 41724254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 478
Target Start/End: Complemental strand, 43115167 - 43115084
Alignment:
Q  394 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactct 478  Q
    |||| |||||| ||||| | |||  |||||||||||| || |||||||||||||||  |||||| |||||| |||||||| ||||    
T  43115167 cacttgtgagattgtttggaagagtttatggaaacaactt-atgacatgtccataacttgttttcagcttatttccataagctct 43115084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 485
Target Start/End: Original strand, 45432936 - 45432988
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggat 485  Q
    ||||||||||| |||||| |||||| |||||| |||||||| |||| ||||||    
T  45432936 ttatgacatgttcataagttgttttcagcttatttccataagctctacaggat 45432988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 48528629 - 48528565
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||| ||||||||||| | ||||| |||||| ||| ||||||||| ||| ||||||||| ||||    
T  48528629 ttatggcatgtccataaacagttttcagcttatttctataaactctccagaatagcttatgaaaa 48528565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 400 - 503
Target Start/End: Original strand, 7262483 - 7262585
Alignment:
Q  400 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaaga 499  Q
    |||||| |||||||||| |||||  |||||  ||| |||||||| ||||||||||||| | |||| ||||| || |||||||||||||||||| ||||||    
T  7262483 tgagacggttttggagagcttataaaaacagcttt-tgacatgttcataagctgttttcaccttatttccacaagctcttcaggatagcttatgaaaaga 7262581  T
Q  500 actt 503  Q
    ||||    
T  7262582 actt 7262585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 416 - 502
Target Start/End: Complemental strand, 3924713 - 3924628
Alignment:
Q  416 aacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaact 502  Q
    |||||||| ||||||||| |||| ||||  ||||| ||||||  ||||| |||||||||||||||||||||||||||||||| ||||    
T  3924713 aacttatgaaaacaattt-atgaaatgtttataagttgttttcggcttatttccataaactcttcaggatagcttataaaaacaact 3924628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 399 - 490
Target Start/End: Original strand, 28935840 - 28935930
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctt 490  Q
    |||||||||||| ||||| ||||| ||  || ||| |||||||||||||||| | |||| |||||| |||||||| ||||||||||||||||    
T  28935840 gtgagactgtttgggagagcttatagagtcagttt-atgacatgtccataagttttttttagcttatttccataagctcttcaggatagctt 28935930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 402 - 491
Target Start/End: Complemental strand, 15579585 - 15579497
Alignment:
Q  402 agactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 491  Q
    ||||||||| ||||| ||| ||||||||| || |||||||||||||||| |||| | |||||| ||||||||||||  || |||||||||    
T  15579585 agactgtttgggagagcttgtggaaacaactt-atgacatgtccataagttgttctcagcttatttccataaactcaacatgatagctta 15579497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 487
Target Start/End: Complemental strand, 10439792 - 10439705
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatag 487  Q
    |||||||| ||| ||||| |||||| ||||||  | ||||||||||||||| ||| ||| |||||| ||||||||||||| ||||||||    
T  10439792 gtgagactatttgggagagcttatgaaaacaaact-atgacatgtccataatctgctttcagcttatttccataaactctccaggatag 10439705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 12477284 - 12477348
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||||||||||||| |||||| |||||| ||||||| ||||| || |||||||||| ||||    
T  12477284 ttatgacatgtccataagttgttttcagcttatttccatacactctccatgatagcttattaaaa 12477348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 27140551 - 27140487
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||||||||||||| |||||| |||||| || ||||| |||| || |||||||||||||||    
T  27140551 ttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagcttataaaaa 27140487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 433 - 492
Target Start/End: Complemental strand, 35925763 - 35925704
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    ||||||||||| ||||||||||||| | |||| ||||||||||||| || ||||||||||    
T  35925763 ttatgacatgttcataagctgttttcaacttatttccataaactctccatgatagcttat 35925704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 486
Target Start/End: Complemental strand, 26184821 - 26184768
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggata 486  Q
    ||||||||||||||||||||||||| || ||| |||||||| |||| |||||||    
T  26184821 ttatgacatgtccataagctgttttcagattatttccataagctctccaggata 26184768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 404 - 493
Target Start/End: Original strand, 28689421 - 28689509
Alignment:
Q  404 actgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 493  Q
    |||||||| ||||||||| |||||||  || |||||||||||||||| |||||| |||||| || ||||| || | || |||||||||||    
T  28689421 actgttttagagaacttacggaaacagctt-atgacatgtccataagttgttttcagcttattttcataagctttccaagatagcttata 28689509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 522
Target Start/End: Complemental strand, 44422772 - 44422684
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaaca 522  Q
    |||||||||||||||||||||  |  |||||| || ||||| |||| |||||||||||||||||| | | ||| ||||| ||||||||||    
T  44422772 ttatgacatgtccataagctgactacagcttattttcataagctctccaggatagcttataaaaatagc-ttatagcttatatgaaaaca 44422684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 493
Target Start/End: Original strand, 3597278 - 3597338
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 493  Q
    |||||||||| ||||||||| |||| |||||| ||||||||||| |||  |||||||||||    
T  3597278 ttatgacatggccataagctattttcagcttatttccataaactgttcgtgatagcttata 3597338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 413 - 473
Target Start/End: Complemental strand, 4549322 - 4549263
Alignment:
Q  413 gagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataa 473  Q
    |||||||| |||||||||||| |||||||||| ||||| |||||| |||||| ||||||||    
T  4549322 gagaacttttggaaacaattt-atgacatgtctataagttgttttcagcttatttccataa 4549263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 503
Target Start/End: Complemental strand, 30257758 - 30257686
Alignment:
Q  431 ttttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    ||||||||||||| ||||||||||||| |||||| ||| |||| | || |||||||| |||| |||| |||||    
T  30257758 ttttatgacatgttcataagctgttttcagcttatttctataagccctccaggatagtttatgaaaacaactt 30257686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 478
Target Start/End: Original strand, 31517699 - 31517782
Alignment:
Q  394 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactct 478  Q
    |||| |||||||||||| |||||||||||  |||||| |  ||||||||| ||||||||||||| |||||| || ||||| ||||    
T  31517699 cacttgtgagactgtttgggagaacttatcaaaacaactc-atgacatgttcataagctgttttcagcttattttcataagctct 31517782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 435 - 531
Target Start/End: Original strand, 44031998 - 44032093
Alignment:
Q  435 atgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaacaaattgactt 531  Q
    |||||||||||||||||| |||| |||| | |||||||| ||||||| |||| |||| | |||  | |||| ||||| ||||||||||| |||||||    
T  44031998 atgacatgtccataagctattttcagctaatttccataagctcttcaagataactta-agaaaatagtttatagcttatatgaaaacaatttgactt 44032093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 497
Target Start/End: Original strand, 23373272 - 23373373
Alignment:
Q  394 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 493  Q
    |||| |||||| ||||| ||||| ||||| ||||||| || |||||||||||| |  ||||||| |||||| |||  ||| ||||||||||||||||||     
T  23373272 cacttgtgagattgtttgggagagcttatagaaacaactt-atgacatgtccacat-ctgttttcagcttatttctgtaagctcttcaggatagcttatg 23373369  T
Q  494 aaaa 497  Q
    ||||    
T  23373370 aaaa 23373373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 492
Target Start/End: Original strand, 37593681 - 37593740
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    ||||||||||| ||||||||||||| |||||| || ||||| |||||||  |||||||||    
T  37593681 ttatgacatgttcataagctgttttcagcttattttcataagctcttcaaaatagcttat 37593740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 473
Target Start/End: Original strand, 29007680 - 29007753
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataa 473  Q
    |||||||||||||||| | ||| ||||||||| ||||||| |||| |||||| |||||| |||||| ||| ||||    
T  29007680 gtgagactgttttggatagcttttggaaacaa-tttatgatatgttcataagttgttttcagcttatttcgataa 29007753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 428
Target Start/End: Complemental strand, 567660 - 567631
Alignment:
Q  399 gtgagactgttttggagaacttatggaaac 428  Q
    ||||||||||||||||||||||||||||||    
T  567660 gtgagactgttttggagaacttatggaaac 567631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 502
Target Start/End: Original strand, 4699612 - 4699681
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaact 502  Q
    ||||||||||| ||||||||||||| |||||| ||| |||| |||| | |||||| |||| |||| ||||    
T  4699612 ttatgacatgttcataagctgtttttagcttatttctataagctctccgggatagtttatgaaaataact 4699681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 478
Target Start/End: Original strand, 11639413 - 11639458
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactct 478  Q
    ||||||||||||||||||||||||| |||||| || ||||| ||||    
T  11639413 ttatgacatgtccataagctgtttttagcttattttcataagctct 11639458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 429
Target Start/End: Original strand, 36495452 - 36495481
Alignment:
Q  400 tgagactgttttggagaacttatggaaaca 429  Q
    ||||||||||||||||||||||||||||||    
T  36495452 tgagactgttttggagaacttatggaaaca 36495481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 440 - 481
Target Start/End: Complemental strand, 52286744 - 52286703
Alignment:
Q  440 atgtccataagctgttttgagcttacttccataaactcttca 481  Q
    ||||||||||||| |||| |||||| ||||||||||||||||    
T  52286744 atgtccataagctatttttagcttatttccataaactcttca 52286703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 435 - 491
Target Start/End: Original strand, 6231815 - 6231871
Alignment:
Q  435 atgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 491  Q
    ||||||||||||||| ||||||| |||||| ||| ||||  |||||||| |||||||    
T  6231815 atgacatgtccataaactgttttcagcttatttctataagttcttcaggttagctta 6231871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 432 - 492
Target Start/End: Original strand, 16981932 - 16981992
Alignment:
Q  432 tttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    ||||||||||||||||||| |||||| |||||| ||  |||| |||| || ||||||||||    
T  16981932 tttatgacatgtccataagttgtttttagcttatttatataagctctccatgatagcttat 16981992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 418 - 470
Target Start/End: Complemental strand, 17628686 - 17628635
Alignment:
Q  418 cttatggaaacaattttatgacatgtccataagctgttttgagcttacttcca 470  Q
    ||||||||||||| || ||||||||||||||||||||||| ||| || |||||    
T  17628686 cttatggaaacaactt-atgacatgtccataagctgttttcagcatatttcca 17628635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 393 - 497
Target Start/End: Original strand, 33723340 - 33723443
Alignment:
Q  393 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    ||||| ||||||||| || ||| ||||||||||||| |  | ||||||||| ||| || |||||| |||||| |||||||| || | |||| ||||||||    
T  33723340 acacttgtgagactgcttgggaaaacttatggaaac-agctcatgacatgttcatgagatgttttcagcttatttccataagctttacagggtagcttat 33723438  T
Q  493 aaaaa 497  Q
     ||||    
T  33723439 gaaaa 33723443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 35017649 - 35017585
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||||||||||||| | |||| | |||| |||||||| |||| ||||| ||||||| ||||    
T  35017649 ttatgacatgtccataagttattttcaacttatttccataagctctccaggacagcttatgaaaa 35017585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 489
Target Start/End: Original strand, 35080066 - 35080122
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagct 489  Q
    ||||||||||| |||||||||||||||||||| ||| | || |||| || |||||||    
T  35080066 ttatgacatgttcataagctgttttgagcttatttcgacaagctctccatgatagct 35080122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 439 - 503
Target Start/End: Original strand, 39347970 - 39348034
Alignment:
Q  439 catgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    |||||||||||| |||||| |||||| |||||||| || | |||||||| |||| |||| |||||    
T  39347970 catgtccataagttgttttcagcttatttccataagctttgcaggatagtttatgaaaacaactt 39348034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 478
Target Start/End: Original strand, 40485732 - 40485815
Alignment:
Q  394 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactct 478  Q
    |||| |||||||||||| ||||||||||| ||||| || ||||||||||| || ||  || ||| |||| |||||||||| ||||    
T  40485732 cacttgtgagactgtttgggagaacttattgaaac-atcttatgacatgtgcagaatttgctttcagctaacttccataagctct 40485815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 466
Target Start/End: Complemental strand, 51730596 - 51730525
Alignment:
Q  394 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttact 466  Q
    |||||||||||||||| |||||| ||||||||||| |  ||||||||| | ||||||  ||||| ||||||||    
T  51730596 cactagtgagactgttgtggagagcttatggaaac-accttatgacattttcataagtagttttcagcttact 51730525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 393 - 478
Target Start/End: Original strand, 27237851 - 27237935
Alignment:
Q  393 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactct 478  Q
    |||||||||| ||||||| | ||||||||| ||||||  || ||||||||| ||||||||||||| |||||| |||||||||||||    
T  27237851 acactagtgaaactgtttggtagaacttatagaaacagctt-atgacatgtacataagctgtttttagcttatttccataaactct 27237935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 433 - 503
Target Start/End: Complemental strand, 35485990 - 35485920
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    |||||| |||| ||||||||||||| |||| | |||||||  ||||||||||||||||||||||| |||||    
T  35485990 ttatgatatgttcataagctgttttcagctcatttccataggctcttcaggatagcttataaaaacaactt 35485920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 433 - 531
Target Start/End: Complemental strand, 43141944 - 43141847
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaacaaattgactt 531  Q
    |||||||||| ||||||| |||||| |  ||| ||||||||||||||||||||||||||| |||| | | ||| ||||| |||| |||||| |||||||    
T  43141944 ttatgacatgcccataagttgttttcattttatttccataaactcttcaggatagcttatgaaaacatc-ttatagcttatatggaaacaatttgactt 43141847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 400 - 497
Target Start/End: Original strand, 1741997 - 1742093
Alignment:
Q  400 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||| ||| ||||| ||||||||||||| || ||||||||| |||||||| | || | |||| |||||||||||||||| ||||| |||| ||||    
T  1741997 tgagactatttgggagagcttatggaaacaactt-atgacatgtgcataagctatcttcaacttatttccataaactcttcatgatagattatgaaaa 1742093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 1939329 - 1939393
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||||||||||||||||||| | |||| |||||||| |||| ||| ||||||||| ||||    
T  1939329 ttatgacatgtccataagctgttttcaacttatttccataagctctccagtatagcttatgaaaa 1939393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 393 - 493
Target Start/End: Original strand, 31228795 - 31228894
Alignment:
Q  393 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    ||||| |||||||||||| ||||  |||||  ||||||||| |||||||||  |||||||||||| || ||| ||||||||||||| || |||| |||||    
T  31228795 acacttgtgagactgtttgggagtgcttattcaaacaattt-atgacatgtatataagctgtttttaggttatttccataaactctccatgataacttat 31228893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 32821882 - 32821818
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||||||||||||||||||| || ||| ||| |||| ||||| |||||||||||| ||||    
T  32821882 ttatgacatgtccataagctgttttcagtttatttctataagctctttaggatagcttatgaaaa 32821818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 34652033 - 34652097
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||||||||||||||||||| | |||| |||||||| |||| || |||||||||| ||||    
T  34652033 ttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaaaa 34652097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 434 - 497
Target Start/End: Original strand, 9530726 - 9530789
Alignment:
Q  434 tatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||||||||||| | |||| ||||||||| ||||| |||| ||||||||||||| ||||    
T  9530726 tatgacatgtccataagttatttttagcttactttcataagctctccaggatagcttatgaaaa 9530789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 433 - 491
Target Start/End: Complemental strand, 9478372 - 9478314
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 491  Q
    |||| |||||||||||||||||||| | ||||||||||| |||||| || |||||||||    
T  9478372 ttattacatgtccataagctgttttcatcttacttccatcaactctccacgatagctta 9478314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 503
Target Start/End: Original strand, 16785326 - 16785415
Alignment:
Q  413 gagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    |||| |||||||||||| ||| |||| | ||| |||||||||||| || |||  |||||||||||||||||||| ||||| |||| |||||    
T  16785326 gagatcttatggaaacagttt-atgagaagtctataagctgttttcagattatctccataaactcttcaggatatcttatgaaaacaactt 16785415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 475
Target Start/End: Complemental strand, 787443 - 787363
Alignment:
Q  394 cactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaac 475  Q
    |||| |||| |||||||  ||||||||||| |||||  || ||||||||||||||||||||||| ||||||  |||||||||    
T  787443 cacttgtgacactgtttgtgagaacttatgaaaacagctt-atgacatgtccataagctgttttcagcttatctccataaac 787363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 502
Target Start/End: Complemental strand, 1810737 - 1810668
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaact 502  Q
    |||||||| ||| |||| || |||| |||||| || ||||||||||||| ||||||||||||||| ||||    
T  1810737 ttatgacaggtcaataaacttttttcagcttattttcataaactcttcaagatagcttataaaaacaact 1810668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 434 - 503
Target Start/End: Original strand, 10563556 - 10563625
Alignment:
Q  434 tatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    ||||||||||||||||||| |||| |||||| || | ||| |||||||| ||||||||| |||| |||||    
T  10563556 tatgacatgtccataagctattttcagcttattttcttaagctcttcagcatagcttatgaaaacaactt 10563625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 401 - 473
Target Start/End: Complemental strand, 11063592 - 11063521
Alignment:
Q  401 gagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataa 473  Q
    |||||||||| | ||| |||||||||||| | |||||||||||||||||| |||||| |||||| || |||||    
T  11063592 gagactgtttggaagagcttatggaaaca-tattatgacatgtccataagttgtttttagcttattttcataa 11063521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 400 - 492
Target Start/End: Complemental strand, 33192306 - 33192216
Alignment:
Q  400 tgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    ||||||||||| | |||||||||| ||||| ||| ||||||| ||||||||||||||| ||||||  |  |||| |||| |||||||||||||    
T  33192306 tgagactgttt-gaagaacttatgaaaacagttt-atgacatatccataagctgttttcagcttatatttataagctctccaggatagcttat 33192216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 478
Target Start/End: Original strand, 41041986 - 41042064
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactct 478  Q
    ||||||||||||  ||||| |||| ||||||| || || |||||||||| ||||||||| | |||| |||||||||||||    
T  41041986 gtgagactgtttcagagaatttatagaaacaactt-attacatgtccatcagctgttttcaacttatttccataaactct 41042064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 492
Target Start/End: Original strand, 1160669 - 1160727
Alignment:
Q  434 tatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttat 492  Q
    ||||||||||||||||| |||||| || ||| |||||||| || |||||||| ||||||    
T  1160669 tatgacatgtccataagttgtttttagtttatttccataagctgttcaggattgcttat 1160727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 497
Target Start/End: Original strand, 10198479 - 10198541
Alignment:
Q  435 atgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||| ||||||||||| | |||||| |||||||| ||||  ||||||| |||||||||    
T  10198479 atgacatgttcataagctgttgtcagcttatttccataatctctctaggatagattataaaaa 10198541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 623
Target Start/End: Original strand, 14316970 - 14317012
Alignment:
Q  581 ttatgctataagcgcttaattaaagtgtatatccaaacaagac 623  Q
    |||||||||||||||||||||||  ||| ||||||||||||||    
T  14316970 ttatgctataagcgcttaattaatttgtttatccaaacaagac 14317012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 491
Target Start/End: Complemental strand, 15120283 - 15120198
Alignment:
Q  405 ctgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 491  Q
    |||||| ||||| ||||||||||||| || ||||||||| ||| ||||||||| |||||| ||  |||| |||| || |||||||||    
T  15120283 ctgtttgggagagcttatggaaacaactt-atgacatgttcattagctgttttaagcttattttgataagctctccatgatagctta 15120198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 503
Target Start/End: Complemental strand, 42381741 - 42381672
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    ||||||||||| | ||||||||||| |||||| || ||||| || |||||||||||||||| ||| |||||    
T  42381741 ttatgacatgttcttaagctgtttttagctta-tttcataagcttttcaggatagcttatagaaataactt 42381672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 447 - 497
Target Start/End: Original strand, 42817387 - 42817437
Alignment:
Q  447 taagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||| |||||| ||||||||||||||| |||||||| ||||||||| ||||    
T  42817387 taagttgtttttagcttacttccataagctcttcagaatagcttatgaaaa 42817437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 3973605 - 3973548
Alignment:
Q  436 tgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 493  Q
    |||| ||||||||| ||||||| |||||| ||||||||||||   |||||||||||||    
T  3973605 tgacgtgtccataacctgttttcagcttatttccataaactccctaggatagcttata 3973548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 14316109 - 14316173
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagctta 464  Q
    |||||||| ||||||||| |||||||||||||  ||||||||| |  |||||||||||| ||||||    
T  14316109 gtgagactattttggagagcttatggaaacaa-cttatgacatatgtataagctgttttcagctta 14316173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 452
Target Start/End: Original strand, 28803494 - 28803546
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagct 452  Q
    ||||||||||||  |||||| |||||||||||  ||||||||||||||||||||    
T  28803494 gtgagactgtttgagagaacatatggaaacaa-cttatgacatgtccataagct 28803546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 497
Target Start/End: Complemental strand, 41817269 - 41817177
Alignment:
Q  404 actgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||| |||||| ||||| ||||| | |||||||||||  ||||  |||||| |||||| |||||||| |||| |||||||| |||| ||||    
T  41817269 actgtttaggagaatttatgaaaaca-tcttatgacatgttgataatttgttttcagcttatttccataagctctccaggatagtttatgaaaa 41817177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 452 - 496
Target Start/End: Original strand, 1741530 - 1741574
Alignment:
Q  452 tgttttgagcttacttccataaactcttcaggatagcttataaaa 496  Q
    |||||| |||||| |||||||||||||||||||||  ||||||||    
T  1741530 tgttttcagcttatttccataaactcttcaggataaattataaaa 1741574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 473
Target Start/End: Complemental strand, 10285933 - 10285893
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataa 473  Q
    ||||||||||||||||||||||||| | |||| ||||||||    
T  10285933 ttatgacatgtccataagctgttttcaacttatttccataa 10285893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 12215880 - 12215816
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||||||||||||||||||| | | || | |||||| ||||  ||||| |||||||||||    
T  12215880 ttatgacatgtccataagctgttttcaccatattcccataagctctcaaggatggcttataaaaa 12215816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 404 - 452
Target Start/End: Original strand, 39962268 - 39962315
Alignment:
Q  404 actgttttggagaacttatggaaacaattttatgacatgtccataagct 452  Q
    ||||||| ||||| ||||| |||||||||| ||||||||||||||||||    
T  39962268 actgtttgggagagcttatagaaacaattt-atgacatgtccataagct 39962315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 41144283 - 41144219
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||||||| ||||| |||||| |||||| ||||| ||||||| || | |||||||| ||||    
T  41144283 ttatgacatgtcaataagttgtttttagcttatttccagaaactctccaagttagcttatgaaaa 41144219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 505
Target Start/End: Original strand, 43065447 - 43065519
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaacttta 505  Q
    |||||||||||||||||  |||||| |||||| ||| |||| |||| || |||| ||||| |||| |||||||    
T  43065447 ttatgacatgtccataaattgttttcagcttatttcaataagctctccacgataacttatgaaaacaacttta 43065519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 43985282 - 43985218
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||||||||||||||| |||| | |||  |||||||| ||||||| | ||||||| |||||    
T  43985282 ttatgacatgtccataagcttttttcaacttgtttccataagctcttcacggtagcttacaaaaa 43985218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 493
Target Start/End: Original strand, 44458335 - 44458395
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 493  Q
    ||||||||| |||||||| |||||| |||||| ||  ||||||||| || |||||||||||    
T  44458335 ttatgacatatccataagttgtttttagcttatttatataaactctccatgatagcttata 44458395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 24363601 - 24363668
Alignment:
Q  436 tgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    ||||||||||||||| |||||| |||||| |||||||| |||| ||||||||||||| |||| |||||    
T  24363601 tgacatgtccataagttgttttcagcttatttccataacctctccaggatagcttatgaaaacaactt 24363668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 399 - 497
Target Start/End: Complemental strand, 4966262 - 4966165
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||||||| ||||| ||||| ||||| | || |||| ||||||||||| |||||| || ||| |||||||| ||||||||||| |||||| ||||    
T  4966262 gtgagactgtttaggagagcttatagaaaccactt-atgatatgtccataagttgttttcagtttatttccataagctcttcaggatggcttatgaaaa 4966165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 399 - 473
Target Start/End: Original strand, 48157084 - 48157157
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataa 473  Q
    |||||||||||| ||||| ||||| ||||||| || ||| ||||||||||||||||||| |||||| ||||||||    
T  48157084 gtgagactgtttgggagagcttatagaaacaactt-atgccatgtccataagctgttttcagcttatttccataa 48157157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 503
Target Start/End: Original strand, 44151475 - 44151547
Alignment:
Q  431 ttttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    |||||||||||||||||||| |||||| |||||| |||||||| || |||| ||||| |||| |||| |||||    
T  44151475 ttttatgacatgtccataagatgttttcagcttatttccataagcttttcaagatagtttatgaaaacaactt 44151547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 435 - 478
Target Start/End: Original strand, 27496406 - 27496449
Alignment:
Q  435 atgacatgtccataagctgttttgagcttacttccataaactct 478  Q
    ||||||||||||||||||||||| |||||| |||||||||||||    
T  27496406 atgacatgtccataagctgttttcagcttatttccataaactct 27496449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 435 - 478
Target Start/End: Original strand, 27503064 - 27503107
Alignment:
Q  435 atgacatgtccataagctgttttgagcttacttccataaactct 478  Q
    ||||||||||||||||||||||| |||||| |||||||||||||    
T  27503064 atgacatgtccataagctgttttcagcttatttccataaactct 27503107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 399 - 490
Target Start/End: Complemental strand, 39334299 - 39334209
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctt 490  Q
    |||||||||||| | |||  ||||||||||||||| |||||||||||||||| ||  || |||||| |||||||| |||  |||||||||||    
T  39334299 gtgagactgtttggtagagtttatggaaacaattt-atgacatgtccataagttgcattcagcttatttccataagctcgccaggatagctt 39334209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 419 - 497
Target Start/End: Original strand, 9423578 - 9423655
Alignment:
Q  419 ttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||||||||| ||||||||| |||||| |||||| |||||| ||| | || |||| ||||||||||||| ||||    
T  9423578 ttatggaaacaattt-atgacatgttcataagttgttttcagcttatttcaagaagctctccaggatagcttattaaaa 9423655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 433 - 491
Target Start/End: Original strand, 27626120 - 27626178
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 491  Q
    ||||||||||||||||| ||||||| | |||| |||||||| ||||||| |||||||||    
T  27626120 ttatgacatgtccataaactgttttaaacttatttccataagctcttcatgatagctta 27626178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 478
Target Start/End: Original strand, 27517853 - 27517898
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactct 478  Q
    ||||||||||||||||||| ||||| |||||| |||||||||||||    
T  27517853 ttatgacatgtccataagcagttttcagcttatttccataaactct 27517898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 434 - 491
Target Start/End: Complemental strand, 33894699 - 33894642
Alignment:
Q  434 tatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctta 491  Q
    ||||||||||||||||| |||||| |||||| ||| ||||||| | ||||||||||||    
T  33894699 tatgacatgtccataagttgttttcagcttatttcaataaactttccaggatagctta 33894642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 12234886 - 12234950
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||||||||||| |||||||||||| |||||| |||||||| ||||  |||| |||| |||||||    
T  12234886 ttatgacatgtctataagctgttttcagcttatttccataagctctctaggaaagctcataaaaa 12234950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 462
Target Start/End: Original strand, 28520979 - 28521038
Alignment:
Q  402 agactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagct 462  Q
    |||||| || ||||||||||||||||||| || |||||||||| |||||||||||| ||||    
T  28520979 agactgcttaggagaacttatggaaacaactt-atgacatgtctataagctgttttcagct 28521038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 449
Target Start/End: Original strand, 29574583 - 29574638
Alignment:
Q  393 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataa 449  Q
    ||||| |||||||||||| ||||||||||||||||| |  |||||||||||||||||    
T  29574583 acacttgtgagactgtttcggagaacttatggaaac-agcttatgacatgtccataa 29574638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 490
Target Start/End: Complemental strand, 39345577 - 39345487
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagctt 490  Q
    |||||||||||| | |||  | ||||||||| ||| |||||||||||||||| || ||| |||||| ||||||||  || ||||||||||||    
T  39345577 gtgagactgtttggtagagttcatggaaacagttt-atgacatgtccataagttgctttcagcttatttccataaggtcgtcaggatagctt 39345487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 463
Target Start/End: Complemental strand, 36538020 - 36537951
Alignment:
Q  393 acactagtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagctt 463  Q
    ||||| |||||| |||||  ||||||||||||||||||  ||||||||||| |||||| |||||| |||||    
T  36538020 acacttgtgagattgtttgagagaacttatggaaacaa-cttatgacatgttcataagttgtttttagctt 36537951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 503
Target Start/End: Complemental strand, 40439119 - 40439057
Alignment:
Q  441 tgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    |||| |||||||||||| | |||| |||||||| ||||||||||||||| || |||| |||||    
T  40439119 tgtctataagctgtttttaacttatttccataagctcttcaggatagctaatgaaaacaactt 40439057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 36598320 - 36598384
Alignment:
Q  399 gtgagactgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagctta 464  Q
    |||||| |||||  |||| |||||||||||| | ||||||||||| ||||||||||||| ||||||    
T  36598320 gtgagattgtttgagagagcttatggaaaca-tcttatgacatgttcataagctgttttcagctta 36598384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 6552289 - 6552353
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    ||||||||| | ||||||||||||| |||||| || |||||||||| || ||||| |||| ||||    
T  6552289 ttatgacatattcataagctgttttcagcttattttcataaactctgcatgatagtttatgaaaa 6552353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 401 - 457
Target Start/End: Complemental strand, 30535667 - 30535612
Alignment:
Q  401 gagactgttttggagaacttatggaaacaattttatgacatgtccataagctgtttt 457  Q
    ||||||||||||||||||||||| ||||||  |||||| |||| | |||||||||||    
T  30535667 gagactgttttggagaacttatgaaaacaa-cttatgatatgttcgtaagctgtttt 30535612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 413 - 497
Target Start/End: Original strand, 33645939 - 33646021
Alignment:
Q  413 gagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaa 497  Q
    |||| ||||||||||||| || |||||||||| ||||| |||||| || ||| |||||||| |||| || |||||||||| ||||    
T  33645939 gagagcttatggaaacaactt-atgacatgtctataagttgtttttaggttatttccataagctctcca-gatagcttatgaaaa 33646021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 433 - 503
Target Start/End: Complemental strand, 306399 - 306329
Alignment:
Q  433 ttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaactt 503  Q
    |||||||||| |||||||||||||| ||||||||| ||||| ||||  |||||||||||| |||| |||||    
T  306399 ttatgacatgcccataagctgttttcagcttacttacataagctctctaggatagcttatgaaaacaactt 306329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 478
Target Start/End: Original strand, 12682 - 12746
Alignment:
Q  413 gagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactct 478  Q
    |||| ||||||||||||| || |||||||||||||||| |||||| ||||||  ||||||| ||||    
T  12682 gagaccttatggaaacaactt-atgacatgtccataagttgttttcagcttagctccataagctct 12746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 435 - 475
Target Start/End: Original strand, 10616 - 10656
Alignment:
Q  435 atgacatgtccataagctgttttgagcttacttccataaac 475  Q
    |||||||||||||||| |||||| |||||| ||||||||||    
T  10616 atgacatgtccataagttgttttcagcttatttccataaac 10656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University