View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9371_low_42 (Length: 287)
Name: NF9371_low_42
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9371_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 286
Target Start/End: Original strand, 35020136 - 35020413
Alignment:
| Q |
9 |
gagaagcaaaggataagaaaaatgattagagannnnnnngatcttagtggttcatttgttgtttctgacacgttaccgtatttgagatggttggatttgg |
108 |
Q |
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| T |
35020136 |
gagaatcaaaggataagaaaaatgattagagatttttttaatcttagtggttcatttgttgtttctgacatgttaccgtatttgagatggttggatttgg |
35020235 |
T |
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| Q |
109 |
atggaaaacagaagcaaatgaagaaaacagcaaaagaaatggatgagtttgtttgtgtttggcttgatcaacacaaacgtaacaagaattctggtcgtga |
208 |
Q |
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| T |
35020236 |
atggaaaacagaagcaaatgaagaaaacagcaaaagagttagatgactttgtttgtgtttggcttgatcagcacaaacataagaagaattctggtcgtga |
35020335 |
T |
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| Q |
209 |
acaagatttcatggatgtgctgctttccaccattgatgaagatttagatggtcgtgatgctgatactataaccaaagc |
286 |
Q |
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| T |
35020336 |
acaagatttcatggatgtgctgctttcaaccgttgatgaagatttagatggccgtgatgctgatactacaatcaaagc |
35020413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 196
Target Start/End: Original strand, 35036374 - 35036522
Alignment:
| Q |
48 |
gatcttagtggttcatttgttgtttctgacacgttaccgtatttgagatggttggatttggatggaaaacagaagcaaatgaagaaaacagcaaaagaaa |
147 |
Q |
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| T |
35036374 |
gatctcagcggttcatttgttatatctgacatgttgcggttttttagatggttggatttggatggaaaacagaagcagatgaagaaaacggctaaagagt |
35036473 |
T |
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| Q |
148 |
tggatgagtttgtttgtgtttggcttgatcaacacaaacgtaacaagaa |
196 |
Q |
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| T |
35036474 |
tagatgattttgttcaagtttggctcgatcaacacaaacgcaacaagaa |
35036522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 189
Target Start/End: Original strand, 35044506 - 35044646
Alignment:
| Q |
49 |
atcttagtggttcatttgttgtttctgacacgttaccgtatttgagatggttggatttggatggaaaacagaagcaaatgaagaaaacagcaaaagaaat |
148 |
Q |
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| T |
35044506 |
atctttgtggttcctttgttatatctgattcgttgccgtttttaagatggttggatttggatggaaaagagaaggaaatgaagaaaactgctaaagagtt |
35044605 |
T |
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| Q |
149 |
ggatgagtttgtttgtgtttggcttgatcaacacaaacgta |
189 |
Q |
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| T |
35044606 |
ggatgagtttgttcaaggttggattgatcaacacaaacgta |
35044646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 35030251 - 35030299
Alignment:
| Q |
218 |
catggatgtgctgctttccaccattgatgaagatttagatggtcgtgat |
266 |
Q |
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| T |
35030251 |
catggatgtgctgctttccaccattgatgaagatttagatgttcgtgat |
35030299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 35036545 - 35036603
Alignment:
| Q |
216 |
ttcatggatgtgctgctttccaccattgatga---agatttagatggtcgtgatgctga |
271 |
Q |
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| T |
35036545 |
ttcatggatgtgctcctttcaaccgttgatgatcaagatatagatggtcgtgatgctga |
35036603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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