View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9371_low_46 (Length: 253)
Name: NF9371_low_46
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9371_low_46 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 26 - 253
Target Start/End: Original strand, 21432309 - 21432536
Alignment:
| Q |
26 |
aagggagatggagtatttgaactg--agagttagaaataaggatttggtgctgaattgcttaagagattagctctggatcgagggaaatgtagttaatag |
123 |
Q |
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| T |
21432309 |
aagggagatggagtatttgaactgtgagagttagaaataaggatttggtgctgaattgcttaagagattagctctggatcgagggaaatgtagttaatag |
21432408 |
T |
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| Q |
124 |
ttgatgagcttgaagctgtaactaactaaatagtgaagagaagaggttgtaagtcagaattggaacactctagaaattagcactattgtatcattcttgg |
223 |
Q |
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| T |
21432409 |
ttgatgagcttgaagctgtaactaactaaatagtgaatagaagaggttgtaagtcagaattggaacactctagaacttagcactattgtatcattcttgg |
21432508 |
T |
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| Q |
224 |
gagagtatattgggaacttgcaaatttaac |
253 |
Q |
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| T |
21432509 |
gagag--tattgggaacttgcaaatttaac |
21432536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 27099958 - 27099905
Alignment:
| Q |
174 |
aagtcagaattggaacactctagaaattagcactattgtatcattcttgggaga |
227 |
Q |
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| T |
27099958 |
aagtcagaattgggacactctagaatttagccctattgtatcattcttgggaga |
27099905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 27100029 - 27099973
Alignment:
| Q |
70 |
ggtgctgaattgcttaagagattagctctggatcgagggaaatgtagttaatagttgat |
128 |
Q |
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| T |
27100029 |
ggtgctgaattacttaagagattagctct--agggagggaaatgtaattaatagttgat |
27099973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 26988428 - 26988470
Alignment:
| Q |
169 |
gttgtaagtcagaattggaacactctagaaattagcactattg |
211 |
Q |
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| T |
26988428 |
gttgtaagtcagaattgggacaatctagaatttagcactattg |
26988470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 34690504 - 34690546
Alignment:
| Q |
169 |
gttgtaagtcagaattggaacactctagaaattagcactattg |
211 |
Q |
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| T |
34690504 |
gttgtaagtcagaattgggacagtctagaatttagcactattg |
34690546 |
T |
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