View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9371_low_47 (Length: 253)
Name: NF9371_low_47
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9371_low_47 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 36677102 - 36677340
Alignment:
| Q |
16 |
gacatcacttattcatttgaattttccattacattacatcatttgcgaatcgtaacttgaaatatcatctt-aaaagcacccaaaatctaagattcctta |
114 |
Q |
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| T |
36677102 |
gacatcacttattcatttgaattttccattacattacatcatttgcgaatcgtaacttgaaatatcatctttaaaagcacccaaaatctaagattcctta |
36677201 |
T |
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| Q |
115 |
tacaatttacttaaacataataacaactaactgggtgcacgggttaacaagaccgatattattaatagatagatagtagatatatttgaagcacaataat |
214 |
Q |
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| T |
36677202 |
tacaatttacttaaacataataacaactaactgggtgcacgggttaacaagaccgatattattaatagatagatagtagatatatttgaagcacaataat |
36677301 |
T |
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| Q |
215 |
aattgtaaaataataggatcataaacgacttgtttagca |
253 |
Q |
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| T |
36677302 |
aattgtaaaatcataggatcataaacgacttgtttagca |
36677340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 36687184 - 36687422
Alignment:
| Q |
16 |
gacatcacttattcatttgaattttccattacattacatcatttgcgaatcgtaacttgaaatatcatctt-aaaagcacccaaaatctaagattcctta |
114 |
Q |
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| T |
36687184 |
gacatcacttattcatttgaattttccattacattacatcatttgcgaatcgtaacttgaaatatcatctttaaaagcacccaaaatctaagattcctta |
36687283 |
T |
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| Q |
115 |
tacaatttacttaaacataataacaactaactgggtgcacgggttaacaagaccgatattattaatagatagatagtagatatatttgaagcacaataat |
214 |
Q |
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| T |
36687284 |
tacaatttacttaaacataataacaactaactgggtgcacgggttaacaagaccgatattattaatagatagatagtagatatatttgaagcacaataat |
36687383 |
T |
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| Q |
215 |
aattgtaaaataataggatcataaacgacttgtttagca |
253 |
Q |
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| T |
36687384 |
aattgtaaaatcataggatcataaacgacttgtttagca |
36687422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 36665431 - 36665304
Alignment:
| Q |
23 |
cttattcatttgaattttccattacattacat--cat--ttgcgaatcgtaacttgaaatatcatcttaa-aagcacccaaaatctaagattccttatac |
117 |
Q |
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| T |
36665431 |
cttattcatttgaattttccattacattacattacatcattgtgaatcgtgacttgaaatatgatctttagaagcactcaaaatctaagattccatatac |
36665332 |
T |
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| Q |
118 |
aatttacttaaacataataacaactaac |
145 |
Q |
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| T |
36665331 |
aatttacttaaacataataaccactaac |
36665304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 36665022 - 36664986
Alignment:
| Q |
189 |
agtagatatatttgaagcacaataataattgtaaaat |
225 |
Q |
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| T |
36665022 |
agtagatatattcgaagcacaataatagttgtaaaat |
36664986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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