View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9371_low_48 (Length: 250)

Name: NF9371_low_48
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9371_low_48
NF9371_low_48
[»] chr6 (3 HSPs)
chr6 (9-250)||(33170822-33171063)
chr6 (10-219)||(33155163-33155372)
chr6 (9-211)||(33145026-33145228)


Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 33171063 - 33170822
Alignment:
Q  9 agcacagaattgggctatcttaagtttgccaattacaataactacacaaaacattacaaattagaggataatctgttgaacaaggtttggtatcaaccag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33171063 agcacagaattgggctatcttaagtttgccaattacaataactacacaaaacattacaaattagaggataatctgttgaacaaggtttggtatcaaccag 33170964  T
Q  109 agagaatttttcctattgatggaactcctgaagtttggcagcctgctttttgggttccagttgacaaaacttactttgaaattgcaagaaagctcaaggt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33170963 agagaatttttcctattgatggaactcctgaagtttggcagcctgctttttgggttccagttgacaaaacttactttgaaattgcaagaaagctcaaggt 33170864  T
Q  209 gagtccaaccctaattgaccatctcattatgagtgtttgttt 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33170863 gagtccaaccctaattgaccatctcattatgagtgtttgttt 33170822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 33155372 - 33155163
Alignment:
Q  10 gcacagaattgggctatcttaagtttgccaattacaataactacacaaaacattacaaattagaggataatctgttgaacaaggtttggtatcaaccaga 109  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||    
T  33155372 gcacagaattgggctatcttaagttttcgaattacaataactacacaaaacattccaaatcagaggaaaatttgttgaacaaggtttggtatcaaccaga 33155273  T
Q  110 gagaatttttcctattgatggaactcctgaagtttggcagcctgctttttgggttccagttgacaaaacttactttgaaattgcaagaaagctcaaggtg 209  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33155272 gagaatttttcctgttgatggaactcctgaagtttggcagcctgttttttgggttccagttgacaaaacttactttgaaattgcaagaaagctcaaggtg 33155173  T
Q  210 agtccaaccc 219  Q
    ||| ||||||    
T  33155172 agttcaaccc 33155163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 33145228 - 33145026
Alignment:
Q  9 agcacagaattgggctatcttaagtttgccaattacaataactacacaaaacattacaaattagaggataatctgttgaacaaggtttggtatcaaccag 108  Q
    |||| |||||| || |||||||||||| |||||||||||||||||||||| ||||  |||| || ||| ||||| |||| ||||||||||||||||||||    
T  33145228 agcaaagaatttggttatcttaagttttccaattacaataactacacaaagcattcaaaatcagtggaaaatcttttgagcaaggtttggtatcaaccag 33145129  T
Q  109 agagaatttttcctattgatggaactcctgaagtttggcagcctgctttttgggttccagttgacaaaacttactttgaaattgcaagaaagctcaaggt 208  Q
    ||  |||||||||| | |||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  33145128 aggaaatttttcctgtggatggaacacctgaagttttgcaacatgctttttgggttccagttgacaaaacttacttcgaaatcgcaagaaaactcaaggt 33145029  T
Q  209 gag 211  Q
    |||    
T  33145028 gag 33145026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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