View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9371_low_50 (Length: 243)
Name: NF9371_low_50
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9371_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 37789449 - 37789666
Alignment:
| Q |
1 |
tgtttgccgaaggcatgactttaacctcatcaacatttatgttcgcaatgttcaaccttactccaggcattaccttcatcatggcaatattcttcgggta |
100 |
Q |
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| T |
37789449 |
tgtttgccgaaggcatgactttaacctcatcaacatttatgttcgctatgttcaaccttactccaggcattaccttcatcatggcaatattcttcgggta |
37789548 |
T |
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| Q |
101 |
ctcactacacacttgctgcattttatcttgtttcctatattctcagttattttacactattagttactctattatatgcttttg---ttccatacataga |
197 |
Q |
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| T |
37789549 |
ctcactacacacttgctgcattttatcttgtttcctatattatcagt----------tattagttactctattatatgcttttgattttccatacataga |
37789638 |
T |
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| Q |
198 |
ttggaaaaactaaattggagtgtagtag |
225 |
Q |
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| T |
37789639 |
ttggaaaaactaaattggagtgtagtag |
37789666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 37798274 - 37798361
Alignment:
| Q |
19 |
ctttaacctcatcaacatttatgttcgcaatgttcaaccttactccaggcattaccttcatcatggcaatattcttcgggtactcact |
106 |
Q |
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| T |
37798274 |
ctttaacctcagcaacatttatgctagctatgttcaaccttactccaggcattaccttcatcatggcaatattatttgggtactcact |
37798361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 37780823 - 37780876
Alignment:
| Q |
53 |
caaccttactccaggcattaccttcatcatggcaatattcttcgggtactcact |
106 |
Q |
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| T |
37780823 |
caaccttattccaggagttaccttcatcatggccatatccttcgggtactcact |
37780876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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