View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9371_low_54 (Length: 238)
Name: NF9371_low_54
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9371_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 66 - 223
Target Start/End: Complemental strand, 33170563 - 33170405
Alignment:
| Q |
66 |
cacggactaggtatttttaaaagaatagaggttcaaatttggtacttgaaaaagaaaaacttgaaacctatttgttccttgataaaaaagaaatatcgat |
165 |
Q |
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| T |
33170563 |
cacggacaaggtatttttaaaagaatagaggttcaaattcggtacttgaaaaagaaaaacttgaaacctatttgttacttgataaaaaagaaatatcgat |
33170464 |
T |
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| Q |
166 |
ttggtcatcattttgaga--gatttagactatgtgtagtgtgactacctggagttataat |
223 |
Q |
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| T |
33170463 |
ttggtcat-attttgagatcgatttagactatgtttagtgtgactacctggagttataat |
33170405 |
T |
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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 33154773 - 33154710
Alignment:
| Q |
156 |
aaatatcgatttggtcatcattttgagagatttagactatgtgtagtgtgactacctggagtta |
219 |
Q |
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| T |
33154773 |
aaatatcgatttagtaatcattttgagggatttaaattgtgtgtagtgtgactgcctgcagtta |
33154710 |
T |
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