View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9371_low_6 (Length: 550)
Name: NF9371_low_6
Description: NF9371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9371_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 20598034 - 20597615
Alignment:
| Q |
1 |
catcttgcccttttcatctgactgttgtccaacaattcattggcatccttgtttcttctcttttttggtctaccaggttgnnnnnnnn-atgggtggtgg |
99 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20598034 |
catcttgcccttttcatctgagtgttgtccaacaattcattggcatccttgtttcttctcttttttggtctaccaggttgtttttttttatgggtggtgg |
20597935 |
T |
|
| Q |
100 |
ctgaagattagtgtactcagtcctttgccataaactttgaccattagctggataaatggaactactgtaacatgctacatatttgtccttcatgaagata |
199 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20597934 |
ctgaagatcagtgtactcagtcctttgccataaactttgaccattagctggataaatggaactactgtaacatgctacatatttgtccttcatgaagata |
20597835 |
T |
|
| Q |
200 |
tctggaacaaagtcaaatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctattagtagccatttcctgcagtcacaag |
299 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20597834 |
tctggaacaaagtcaaatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctgttagtagccatttcctgcagtcacaag |
20597735 |
T |
|
| Q |
300 |
accatctttgcaggttgacatgaaacttgtcaccacttaaagaaacatgcctaacttcataatcaaactcatttgcacgcctacaaatataacatttcat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20597734 |
accatctttgcaggttgacatgaaacttgtcaccacttaaagaaacatgcctaacttcataatcaaactcatttgcacgcctacaaatataacatttcat |
20597635 |
T |
|
| Q |
400 |
aaaattaatatcactactaa |
419 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
20597634 |
aaaattaatatcactactaa |
20597615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 429 - 511
Target Start/End: Complemental strand, 20597514 - 20597432
Alignment:
| Q |
429 |
tgttgggtaacacaccatccttcaacattgcagctttctgcctgtttgcttcccatctctccatcaagtacactctgatgtcc |
511 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20597514 |
tgttgggtaacacaccatcctccaacattgcagctttctgcctgtttgcttcccatctctccatcaggtacactctgatgtcc |
20597432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 8699033 - 8698618
Alignment:
| Q |
1 |
catcttgcccttttcatctgactgttgtccaacaattcattggcatccttgtttcttctcttttttggtctaccaggttgnnnnnnnnatgggtggtggc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8699033 |
catcttgcccttttcatctgagtgttgtccaacaattcattagcatccttgtttcttctcttttttggtctaccaggttgttttttg-atgggtggtggc |
8698935 |
T |
|
| Q |
101 |
tgaagattagtgtactcagtcctttgccataaactttgaccattagctggataaatggaactactgtaacatgctacatatttgtccttcatgaagatat |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
8698934 |
tgaagatcagtgtactcagtcctttgccataaactttgaccattagccggataaatggaactagagtaacatgctacatatttgtccttcatgaagatat |
8698835 |
T |
|
| Q |
201 |
ctggaacaaagtcaaatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctattagtagccatttcctgcagtcacaaga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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|
| T |
8698834 |
ctggaacaaagtcaaatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctgttagtaaccatttcctgcagtcacaaga |
8698735 |
T |
|
| Q |
301 |
ccatctttgcaggttgacatgaaacttgtcaccacttaaagaaacatgcctaacttcataatcaaactcatttgcacgcctacaaatataacatttcata |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8698734 |
ccatctttgcaggttgacatgaaacttgtgaccagttaaagaaacatgtctaacttcataatcaaactcatttgcacgcctacaaatataacatttcata |
8698635 |
T |
|
| Q |
401 |
aaattaatatcactact |
417 |
Q |
| |
|
|||||| |||| ||||| |
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|
| T |
8698634 |
aaattagtatcgctact |
8698618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 429 - 508
Target Start/End: Complemental strand, 8698514 - 8698435
Alignment:
| Q |
429 |
tgttgggtaacacaccatccttcaacattgcagctttctgcctgtttgcttcccatctctccatcaagtacactctgatg |
508 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8698514 |
tgttgggtaacacaccatcctccaacattgcagctttctgcctgtttgcttcccatctctccatcaggtacactctgatg |
8698435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 463 - 504
Target Start/End: Original strand, 37101837 - 37101878
Alignment:
| Q |
463 |
tttctgcctgtttgcttcccatctctccatcaagtacactct |
504 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||| |
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|
| T |
37101837 |
tttctgcctatttgcttcccatctctccatcaggtacactct |
37101878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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