View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9372_high_3 (Length: 534)
Name: NF9372_high_3
Description: NF9372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9372_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Original strand, 16193335 - 16193854
Alignment:
| Q |
1 |
ccgtccaacaattgacaataatgatgatttcgaagaagccaatttgcacttgattttatatgttatagcctgcaagtgagtagtttttgttttcccttga |
100 |
Q |
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| T |
16193335 |
ccgtccaacaattgacaataatgatgatttcgaagaagccaatttgcacttgattttatatgtaatagcctgcaagtgagtagtttttgttttcccttga |
16193434 |
T |
|
| Q |
101 |
atattagcacaacaagataattgaagggaaatgtgtcaattttaaagcccagataagtaacaattcaagataatctagtcaggttacaagcccctcaaaa |
200 |
Q |
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| T |
16193435 |
atattggaacaacaagataattgaagggaaatgtgtcaattttaaagcccagagaagtaacaattcgagataatctagtcaggttacaagcccctcaaaa |
16193534 |
T |
|
| Q |
201 |
tctaccatttctcaaacgtgtattctaaccaaggctcagctataaaaaccaagtcagacttatgagtaagaagtaacctctttaaggccaaccttgatgg |
300 |
Q |
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| T |
16193535 |
tcttcgatttctcaaatgagtattctaaccaaggctcagctataaaaaccaagtcagacttatgagtaagaagtaacctctttaaggccaaacttgatgg |
16193634 |
T |
|
| Q |
301 |
gagttggaaatccctctaatgttccatgagaggcacttcatctaaaatgatttggataatcgcatttagatctggtggctttagaattcttataggagtt |
400 |
Q |
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| T |
16193635 |
gagttggaaatccctctaatgttccatgagaggcacttcatctaaaatgatttggataatcacatttagatctggtggctttagaattcttataggagtt |
16193734 |
T |
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| Q |
401 |
tcccttagtgtattttggctttagaatttcttcttcattcaattgtgtagcatcaacaaattcaaatgtttcggagttgttctcttggtcatgattttgc |
500 |
Q |
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| T |
16193735 |
tccattagtgtattttggctttagaatttcttcttcattcaattgtgtagcatcaacaaattcgaatgtttgggagttgttctcttggtcatgattttgc |
16193834 |
T |
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| Q |
501 |
atttggtaccttgttagtga |
520 |
Q |
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| T |
16193835 |
atttggtaccttgttagtga |
16193854 |
T |
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