View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9372_high_6 (Length: 375)
Name: NF9372_high_6
Description: NF9372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9372_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 52170452 - 52170816
Alignment:
| Q |
1 |
gtattgcggtgtgaatgatgatcctaatatggaactcacatgtgaggacagtgtccccaagttaacaatggatgattctttcttgaaatacagtattctt |
100 |
Q |
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| T |
52170452 |
gtattgcggtgtgaatgatgatcctaatatggaactcacatgtgaggacagtgtccccaagttaacaacggatgattctttcttgaaatacagtattctt |
52170551 |
T |
|
| Q |
101 |
gaatgggacaattcaacacagaaactcagagttactagggaagattactcgagagatgatgtttgtgttcctgtcgacaacatcacattcaatagcagtt |
200 |
Q |
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| T |
52170552 |
gaatgggacaattcaacacagaagctcagagttactagggaagattactcgagagatgatgtttgtgttcctgtcgacaacatcacattcaatagcactt |
52170651 |
T |
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| Q |
201 |
tgtttaaactttatgatgatgtcgctaacgtgactttgttttactattgccttcttacaactgaaactctaccgaatacgtttcacagtgttgactgtag |
300 |
Q |
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| T |
52170652 |
tgtttaaactttatgatgatgtcgctaacgtgactttgttttactattgccttcttacaactgaaactctaccgaatacgtttcacagtgttgaatgtag |
52170751 |
T |
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| Q |
301 |
tgataattcatcagttttatacacccttgttgatccttcttcagctacttactcggacctctgtg |
365 |
Q |
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| T |
52170752 |
tgataattcatcagttttatacacccttgttgatccttctacagctacttactcggacctctgtg |
52170816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 31610416 - 31610369
Alignment:
| Q |
86 |
aaatacagtattcttgaatgggacaattcaacacagaaactcagagtt |
133 |
Q |
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| T |
31610416 |
aaataccgtattcttgaatgggacaatacaacacagagactcagagtt |
31610369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 31621257 - 31621194
Alignment:
| Q |
86 |
aaatacagtattcttgaatgggacaattcaacacagaaactcagagttactagggaagattact |
149 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||| ||| |||| || ||||||| |
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| T |
31621257 |
aaataccgtattcttgaatgggacaatacaacacagaaactcacagtcgctagagacgattact |
31621194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 31636252 - 31636189
Alignment:
| Q |
86 |
aaatacagtattcttgaatgggacaattcaacacagaaactcagagttactagggaagattact |
149 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||| ||| |||| || ||||||| |
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| T |
31636252 |
aaataccgtattcttgaatgggacaatacaacacagaaactcacagtcgctagagacgattact |
31636189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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