View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9372_high_7 (Length: 317)

Name: NF9372_high_7
Description: NF9372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9372_high_7
NF9372_high_7
[»] scaffold0256 (2 HSPs)
scaffold0256 (19-115)||(10703-10799)
scaffold0256 (115-174)||(10625-10684)
[»] scaffold0133 (1 HSPs)
scaffold0133 (142-221)||(14473-14552)
[»] chr6 (4 HSPs)
chr6 (229-295)||(16875247-16875313)
chr6 (230-281)||(16581399-16581450)
chr6 (230-281)||(16613930-16613981)
chr6 (22-66)||(16572950-16572994)


Alignment Details
Target: scaffold0256 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 10799 - 10703
Alignment:
Q  19 gtcaagacatgtcctattctcagatgcttacgggagtttgtgcttaacattgcatttgcttcacatactcactatgatcattttatttttgttttct 115  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10799 gtcaagacatgtcctattctcagacgcttacgggattttgtgcttaacattgcatttgcttcacatactcactatcatcattttatttttgttttct 10703  T

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Target: scaffold0256; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 10684 - 10625
Alignment:
Q  115 tgcacttcatttacattatgnnnnnnnacgagggcttgaaactagacaaatattgtttct 174  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  10684 tgcacttcatttacattatgtttttttacgagggcttgaaactagacaaatattgtttct 10625  T

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Target: scaffold0133 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 14552 - 14473
Alignment:
Q  142 acgagggcttgaaactagacaaatattgtttctatcgcaccaacttctaaccaggttttgcaatcttcgtatagatgcac 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||||||||    
T  14552 acgagggcttgaaactagacaaatattgtttctatcgcaccaacttcttaacagtttttgcaatcttcgtttagatgcac 14473  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 16875247 - 16875313
Alignment:
Q  229 tataacagttcaacattaatctctacgtttgaattaaactctaacgataaacaagttacttattata 295  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||    
T  16875247 tataacagttcaacattaatctctacgtttaaattaaactccaacgataaacaagttgcttattata 16875313  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 16581399 - 16581450
Alignment:
Q  230 ataacagttcaacattaatctctacgtttgaattaaactctaacgataaaca 281  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16581399 ataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca 16581450  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 16613981 - 16613930
Alignment:
Q  230 ataacagttcaacattaatctctacgtttgaattaaactctaacgataaaca 281  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16613981 ataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca 16613930  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 16572950 - 16572994
Alignment:
Q  22 aagacatgtcctattctcagatgcttacgggagtttgtgcttaac 66  Q
    ||||||||||||||||||| | ||||  |||||||||||||||||    
T  16572950 aagacatgtcctattctcaaaagcttgggggagtttgtgcttaac 16572994  T

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