View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9372_low_1 (Length: 613)
Name: NF9372_low_1
Description: NF9372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9372_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 11 - 548
Target Start/End: Original strand, 42395120 - 42395656
Alignment:
| Q |
11 |
cataggttcatgatggaaggaagcacgaagttcgtgaacttgttaaaagtgctggacttgaggtaacctttaattatatatataattcgttatatgaccc |
110 |
Q |
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| T |
42395120 |
cataggttcatgatggaaggaagcacgaagttcgtgaacttgttaaaagtgctggacttgaggtaacctttaattatatatataattcgttatatgaccc |
42395219 |
T |
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| Q |
111 |
tcaaaatgcgaaaagttctaatgcttgagcatgtgtaatatgcaaaaatgatgaaatttagtaaacacaatcccaatcaaactagacaatatttcgtgtt |
210 |
Q |
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| T |
42395220 |
tcaaaatgcgaaaagttctaatgcttgagcatgtgtaatatgcaaaaatgatgaaatttagtaaacacaatcccaatcaaactagacaatatttcgtgtt |
42395319 |
T |
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| Q |
211 |
tcacattttttagcagtttatttatcatgctaattgatatttttctcacatatattatcaaaattgttagatccataatataatattatccatgttgttt |
310 |
Q |
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| T |
42395320 |
tcacattttttagcagtttatttatcatg-taattgatatttttctcacatatattatcaaaattgttagatccataatataatactctccatgttgttt |
42395418 |
T |
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| Q |
311 |
gacattttctttattttatgatgttgaataaattcttgttaatagccttgctttatgttttgtttcatatttcagattcattcattaaagcgagttcgca |
410 |
Q |
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| T |
42395419 |
gatattttctttattttatgatgttgaataaattcttgttaatagccttgctttatgttttgtttcatatttcagattcattcattaaagcgagttcgca |
42395518 |
T |
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| Q |
411 |
tcggtggttttagacttccaccagaccttgggtaaattttgtgcttttaattgtcgtctttagctctcgcgagcgggagtctttttcagtagcagcagca |
510 |
Q |
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| T |
42395519 |
tcggtggttttagacttccaccagaccttgggtaaattttgtgcttttaattgtcgtctttagctctcgcgtgcgggagtctttttcagtagcagcagca |
42395618 |
T |
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| Q |
511 |
atattcaaatagaatcccaacaataatatttcaattga |
548 |
Q |
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| T |
42395619 |
atattcaaatagaatcccaacaataatatttcaattga |
42395656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 562 - 597
Target Start/End: Original strand, 42395671 - 42395706
Alignment:
| Q |
562 |
gtacaaacggattaactagttttcatctgttgtact |
597 |
Q |
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| T |
42395671 |
gtacaaacgggttaactagttttcatctgttgtact |
42395706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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