View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9372_low_10 (Length: 444)
Name: NF9372_low_10
Description: NF9372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9372_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Complemental strand, 3425277 - 3424860
Alignment:
| Q |
11 |
ttggtgtttggtttacttacttgtatagcaattaacaattaattcattcggtatctctcttaatcatcggtgtagatgtaataatccatcacatcataag |
110 |
Q |
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| T |
3425277 |
ttggtgtttggtttacttacttgtatagcaattaacaattaattcattcggtatctctcttaatcatcggtgtagatgtaataatccatcacatcataag |
3425178 |
T |
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| Q |
111 |
aatttacaggttggttgagcacatggtttcaatatattcattttggctttaaacaaaaatggattgacattttttcatatnnnnnnnnnnnnnnnntctc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3425177 |
aatttacaggttggttgagcacatggtttcaatatattcattttggctttaaacaaaaatggattgacattttttcatataaaacaaaaaataaaatctc |
3425078 |
T |
|
| Q |
211 |
gactttaggtatctcagtcaatgtcaatattttaatccacacatgcacatatacatattacatgattattaacaagaatcattgtggaagaagatcaatg |
310 |
Q |
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| T |
3425077 |
gactttaggtatctcagcacttgtcaatattttaatccacacatgcacatatacatattacatgattattaacaagaatcattgtggaagaagatcaatg |
3424978 |
T |
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| Q |
311 |
catagctatggttgatgagggtcactttcaatttccttagccaattctcttgtgagtttgtcagcacgatcatcatgtccaccagcaaatgtataaactc |
410 |
Q |
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| T |
3424977 |
aatagctatggttgattagggtcactttcaatttccttagccaattctcttgtgagtttgtcagcacgatcatcatgtccaccagcaaatgtataaactc |
3424878 |
T |
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| Q |
411 |
taaatgcaaattggaaag |
428 |
Q |
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| T |
3424877 |
taaatgcaaattggaaag |
3424860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 288 - 428
Target Start/End: Original strand, 11916422 - 11916561
Alignment:
| Q |
288 |
atcattgtggaagaagatcaatgcatagctatggttgatgagggtcactttcaatttccttagccaattctcttgtgagtttgtcagcacgatcatcatg |
387 |
Q |
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| T |
11916422 |
atcattgtagaa-aagatcaaaacatagccatggttgattagggtcactttcaatttccttagccaattctcttatgagtttgtcagcacgatcatcatg |
11916520 |
T |
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| Q |
388 |
tccaccagcaaatgtataaactctaaatgcaaattggaaag |
428 |
Q |
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| T |
11916521 |
tccaccagcaaatgtataaaccctaaatgcaaattggaaag |
11916561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 11914783 - 11914863
Alignment:
| Q |
27 |
ttacttgtatagcaattaacaattaattcattcggtatctctcttaatcatcggtgtagatgtaataatccatcacatcat |
107 |
Q |
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| T |
11914783 |
ttacttgtatagaaatcaactattaattcattcagtatctctcttattcattggtgtagatgtaataatccatcacatcat |
11914863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 6607363 - 6607320
Alignment:
| Q |
97 |
catcacatcataagaatttacaggttggttgagcacatggtttc |
140 |
Q |
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| T |
6607363 |
catcacatcataagaatttatatgttggttgagcacatggtttc |
6607320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 426
Target Start/End: Original strand, 35742140 - 35742218
Alignment:
| Q |
348 |
tagccaattctcttgtgagtttgtcagcacgatcatcatgtccaccagcaaatgtataaactctaaatgcaaattggaa |
426 |
Q |
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|||||||||||||||| | |||| |||||||| ||| |||||||||||||||| || || | ||||| ||||||||| |
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| T |
35742140 |
tagccaattctcttgttaacgtgtcggcacgatcgtcaagtccaccagcaaatgtgtagacacgaaatgtaaattggaa |
35742218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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