View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9372_low_11 (Length: 444)
Name: NF9372_low_11
Description: NF9372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9372_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 25702829 - 25703253
Alignment:
| Q |
1 |
tccgtcggtgtctctcctccacatcttcaccgttccatcggctgagccggtgaaaacataggtttgaaatgctgcaactacagcgttcactgcatcatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25702829 |
tccgtcggtgtctctcctccacatcttcaccgttccatcggctgagccggtgaaaacataggtttgaaatgctgcaaccacagcgttcactgcatcatca |
25702928 |
T |
|
| Q |
101 |
tgagctataatcgattccatacacttgaaatccgtaacgcgccaaactttgagagttttatcccacgaacctgaatacaataacccttcttcttggtcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
25702929 |
tgagctataatcgattccatacacttgaaatccgtaacgcgccaaactttgagagttttatcccacgaacctgaatacaacaacccttcttcttgatcca |
25703028 |
T |
|
| Q |
201 |
aactcagactcgaaacagcgtcgaaatgcttcaccttcactgtgtttctccgtcgccggacttctacgtagttctttggattcatcgagcttttgacata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25703029 |
aactcagactcgaaacagcgtcgaaatgcttcaccttcacggtgtttctccgtcgccggacttctacgtagttctttggattcatcgagcttttgacata |
25703128 |
T |
|
| Q |
301 |
gtctttgaaagttggtaagcttccaatacgcttatgatttctagaattttttgaagaaattttccaaactctgatttttccatcttgatgaccggtgaag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25703129 |
gtctttgaaagttggtaagcttccaatacgcttatgatttctagaattttttgaagaaattttccaaaccctgatttttccatcttgatgaccggtgaag |
25703228 |
T |
|
| Q |
401 |
atgtttccttcggatataacaatgg |
425 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
25703229 |
atgtttccttcggatataacaatgg |
25703253 |
T |
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