View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9372_low_13 (Length: 438)
Name: NF9372_low_13
Description: NF9372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9372_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 37812090 - 37812503
Alignment:
| Q |
18 |
attactaatatattaataatatcaaactcaatagcatcagtatacactttctcagcccttgaaggggtttgtcaattttagtcgctattttattttatat |
117 |
Q |
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| T |
37812090 |
attactaatatattaataatatcaaactcaatagcatcagtatacactttctcagcccttgaaggggtttgtcaattttagtcgctattttattttatat |
37812189 |
T |
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| Q |
118 |
ggactaatattattttagtacctatagcaactaaaaaccctcatttttaaattnnnnnnnn-gttcagtactccgaaataannnnnnnn-agagcctaaa |
215 |
Q |
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| T |
37812190 |
ggactaatattattttagtacctatagcaactaaaaaccctcatttttaaattaaaaaaaaagttcagtactccgaaataatttttttttagagcctaaa |
37812289 |
T |
|
| Q |
216 |
actttaaaaaccgttattttataagggataaaaatatatctaaccttaataataaatagaagtaaatgaccaacaaattaatcgttgtacatgttcaata |
315 |
Q |
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| T |
37812290 |
actttaaaaaccgttattttataagggataaaaatatatctaaccttaataataaatagaagtaaatgaccaacaaattaatcgttgtacatgttcaata |
37812389 |
T |
|
| Q |
316 |
ttgaaaaatgattgctttttatatcatttatatagaagtctatcaagnnnnnnnngggatgatgtaatgagtatagttatcataattgtacctagatatc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37812390 |
ttgaaaaatgattgctttttatatcatttatatagaagtctatcaagttttttttgggatgatgtaatgagtatagttatcataattgtacctagatatc |
37812489 |
T |
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| Q |
416 |
atttttagtataat |
429 |
Q |
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||||||||| |||| |
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| T |
37812490 |
atttttagtgtaat |
37812503 |
T |
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