View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9372_low_14 (Length: 417)
Name: NF9372_low_14
Description: NF9372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9372_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 9 - 403
Target Start/End: Complemental strand, 23693049 - 23692655
Alignment:
| Q |
9 |
agcaaaggccatggaagctaacaactgtaactacagttgaagaaatgaagcttataatcaatatgattccaatttgggtattcactataccatttggaat |
108 |
Q |
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| T |
23693049 |
agcaaagtccatggaagctaacaactgtaactacagttgaagaaatgaagcttataatcaatatgataccaatttgggtattcactataccatttggaat |
23692950 |
T |
|
| Q |
109 |
aagtgtagcacaaacatcaacattcttcattaaacaaagtgctataatgaacagaaaaataggtgaaaggtttgaacttccaccagcttcaattttcaca |
208 |
Q |
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| T |
23692949 |
aagtgtagcacaaacatcaacattcttcatcaaacaaagtgctataatgaatagaaagataggtgaaaggtttgaacttccaccagcttcaattttcaca |
23692850 |
T |
|
| Q |
209 |
gttgctgccttaggaatgataatttctgtggccatttatgacaagattctagtacctatgttaagaaaaataaatcaaaatgaaagaggaattaacatcc |
308 |
Q |
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| T |
23692849 |
gttgctgccttaggaatgataatttctgtggccatttatgacaagattctagtacctatgttaagaaaaataaatcaaaatgaaagaggaattaacatcc |
23692750 |
T |
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| Q |
309 |
ttcaaaggattggttttggaatgtttttcactattattacaatgatagtagcagctttaatagagaaaaagagacttgaagatgttgaaaaggat |
403 |
Q |
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| T |
23692749 |
ttcaaaggattggttttggaatgtttttcactattattacaatgatagtggcagctttaatagagaaaaagagacttgaagctgttgaaaaggat |
23692655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 11 - 396
Target Start/End: Complemental strand, 6146242 - 6145857
Alignment:
| Q |
11 |
caaaggccatggaagctaacaactgtaactacagttgaagaaatgaagcttataatcaatatgattccaatttgggtattcactataccatttggaataa |
110 |
Q |
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||||| |||||||| ||| |||| || |||| ||||||||||||||||||||| ||||| ||||| ||||||||| |||| ||| ||||||||||||| |
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| T |
6146242 |
caaagtccatggaaactagcaacagtcactagagttgaagaaatgaagcttatgatcaacatgatcccaatttggatatttactttaccatttggaatgt |
6146143 |
T |
|
| Q |
111 |
gtgtagcacaaacatcaacattcttcattaaacaaagtgctataatgaacagaaaaataggtgaaaggtttgaacttccaccagcttcaattttcacagt |
210 |
Q |
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||| |||||||||||||| ||||| || || ||| || ||||||||| ||||||||||| | | || || ||||||| |||||||||||||| | |
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| T |
6146142 |
gtgctgcacaaacatcaactttctttatcaagcaaggtaatataatgaatagaaaaataggacatggtttcgagattccacccgcttcaattttcactat |
6146043 |
T |
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| Q |
211 |
tgctgccttaggaatgataatttctgtggccatttatgacaagattctagtacctatgttaagaaaaataaatcaaaatgaaagaggaattaacatcctt |
310 |
Q |
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| | || | || |||||||||||||| || ||||| ||||| || || || || | ||||||||||||| | ||||||||||| || ||||| ||| |
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| T |
6146042 |
ttccgctattggtatgataatttctgtcgcaatttacgacaaaatcctcgtgccagttttaagaaaaataagtggcaatgaaagagggatgaacattctt |
6145943 |
T |
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| Q |
311 |
caaaggattggttttggaatgtttttcactattattacaatgatagtagcagctttaatagagaaaaagagacttgaagatgttga |
396 |
Q |
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|||||||||||| |||||||| |||| | || | |||||||||||||||||||| | |||||||| || ||| ||| |||||| |
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| T |
6145942 |
caaaggattggtattggaatggttttttcggttttaacaatgatagtagcagctttggtcgagaaaaaaaggcttaaagttgttga |
6145857 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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