View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9372_low_22 (Length: 280)
Name: NF9372_low_22
Description: NF9372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9372_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 6 - 178
Target Start/End: Complemental strand, 28342997 - 28342815
Alignment:
| Q |
6 |
acttattgatcatgatgataatgcctactttcatgaatgatttggataaacatatgaaccacgtttggattatgatttttattatatatgctggattaat |
105 |
Q |
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| T |
28342997 |
acttattgatcatgatgataatgcctacttttatgtatgatttggataaacatatgaaccacgtttggattatgatttttattatatatgctggattaat |
28342898 |
T |
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| Q |
106 |
atgtaaattgttgcattagtgtaaatggagtat----------tcaattttatagtaaaggtgttggtctgtaagagattaca |
178 |
Q |
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| T |
28342897 |
atgtaaattgttgcattagcgtaaatggagtataatacacttatcaattttatagtaaaggtgttggtctgtaagagattaca |
28342815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 155 - 268
Target Start/End: Complemental strand, 28342810 - 28342697
Alignment:
| Q |
155 |
ggtgttggtctgtaagagattacactgttgtgttgaaccgtgagagattgcaattatgtattttggttcacaagagaatacacattatagaatgagttat |
254 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||| |
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| T |
28342810 |
ggtgttggtcggtaagagattacactgttgtgttgatccgtgagagattgcaattatgtattttggttcataagataatacacactatagaaggagttat |
28342711 |
T |
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| Q |
255 |
cctacaaccctctg |
268 |
Q |
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| T |
28342710 |
cctacaaccctctg |
28342697 |
T |
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