View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9372_low_27 (Length: 258)
Name: NF9372_low_27
Description: NF9372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9372_low_27 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 7141956 - 7141710
Alignment:
| Q |
12 |
gagttagacatcatatattgttggaatcaaacacaactcatttttccttccaactgttagtccaaaatcttctatcatatccaaatcctgagacttcatc |
111 |
Q |
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| T |
7141956 |
gagttagacatcataaacagttggaatcaaacacaactcatttttccttccaactgttagtccaaaatcttctatcatatccaaatcctgagacttcatc |
7141857 |
T |
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| Q |
112 |
tgatttgggagttcccagttaaagtgatagagcaatagagccaaaggaaatataacacttgctaaaccaaaggtcatacccggacacattctccttccag |
211 |
Q |
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| T |
7141856 |
tgatttgggagttcccagttaaagtgatagagcaatagagccaaaggaaatataacacttgctaaaccaaaggtcatacccggacacattctccttccag |
7141757 |
T |
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| Q |
212 |
ctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaa |
258 |
Q |
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| T |
7141756 |
ctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaa |
7141710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 258
Target Start/End: Complemental strand, 7154704 - 7154480
Alignment:
| Q |
34 |
ggaatcaaacacaactcatttttccttccaactgttagtccaaaatcttctatcatatccaaatcctgagacttcatctgatttgggagttcccagttaa |
133 |
Q |
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| T |
7154704 |
ggaatcaaacacaactcattttcccttccaactgccaatccaacattttcagtcatatccaaatcctcaggtttcatctgatttggtagttcccaattaa |
7154605 |
T |
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| Q |
134 |
agtgatagagcaatagagccaaaggaaatataacacttgctaaaccaaaggtcatacccggacacattctccttccagctccgaaaggaatgtactcgaa |
233 |
Q |
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| T |
7154604 |
aatgatatagtaataaagcaagaggaagcataacactagctataccaaatgacatgcctggacacattcttcttccagcaccaaaaggaatatactcaaa |
7154505 |
T |
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| Q |
234 |
gttatttcctttgaaatcaatcaaa |
258 |
Q |
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| T |
7154504 |
attatttcctttgaaatcaatcaaa |
7154480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 31177694 - 31177755
Alignment:
| Q |
193 |
ggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaat |
254 |
Q |
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| T |
31177694 |
ggacacattcttcttccagcaccgaacggtatgtactcaaagtttgtacctttgaaatcaat |
31177755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 22986265 - 22986326
Alignment:
| Q |
193 |
ggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaat |
254 |
Q |
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| T |
22986265 |
ggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaat |
22986326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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