View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9372_low_3 (Length: 590)
Name: NF9372_low_3
Description: NF9372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9372_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 92 - 572
Target Start/End: Complemental strand, 45462703 - 45462223
Alignment:
| Q |
92 |
tgcattcagcatcttctgaagaaaaaacttacagttatgaacaggccctttaggacgaccatcaccaaatccattctgccctttatcaggacaatccctt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45462703 |
tgcattcagcatcttctgaagaaaaaacttacagttatgaacaggccctttaggacgaccatcaccaaatccattctgccctttatcaggacaatccctt |
45462604 |
T |
|
| Q |
192 |
gccaaatgtgtgacaccaccacatattttacaacaaccaccctatcatataaacaacaaatattattaactgaacaaaactaacataattaaatgataag |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45462603 |
gccaaatgtgtgacaccaccacatattttacaacaaccaccctatcatataaacaacaaatattattaactgaacaaaactaacataattaaatgataag |
45462504 |
T |
|
| Q |
292 |
tagcataataagatccaaccaatataccttaggataaatgccatgagcatttttagggcaatttttactcaaatgcccttgttccttacaaacaaaacac |
391 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45462503 |
taacatagtaagatccaaccaatataccttaggataaatgccatgagcatttttagggcaatttttactcaaatgcccttgttccttacaaacaaaacac |
45462404 |
T |
|
| Q |
392 |
tgagcaaacatagtcccgccttcttgaagaggatgaggacaattagcaagagagtgaccattatcaccacagttataacaatacttaaaatcctctttag |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45462403 |
tgagcaaacatagtcccgccttcttgaagaggatgaggacaattagcaagagagtgaccattatcaccacagttataacaatacttaaaatcctctttag |
45462304 |
T |
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| Q |
492 |
aaccaccatcaggacaattctgagctcgatgaccgcgacggcgacaccgtaaacatatcttattcttttcccattcagctt |
572 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
45462303 |
aaccaccatcaggacaattctgagctcgatgaccacgacgccgacaccgcaaacatatcttattcttttcccattcagctt |
45462223 |
T |
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