View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9372_low_32 (Length: 248)
Name: NF9372_low_32
Description: NF9372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9372_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 6338331 - 6338573
Alignment:
| Q |
1 |
tatgaacaaaaatgagcagaataaatccccccaaagtaaggaaaaaagaagatttaaaagtataaaactatattaagacatgtttcaaagccacatttga |
100 |
Q |
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| T |
6338331 |
tatgaacaaaaatgagcagaataagtccccccaaagtaaggaaaaaagaagatttaaaagtataaaactatattaagacatgtttcaaagccacatttga |
6338430 |
T |
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| Q |
101 |
atgctgaagtttctctacacaattatcatatcaaaaacttgtagtccaagtcactcagataacctacatgccagttttacagacatgggtatgtgtgtgt |
200 |
Q |
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| T |
6338431 |
atgctgaagtttctctacacaattatcatatcaaaaacttgtggtccaagtcactcagataacctacatgccagttttacagacatgggtatgtgtgtgt |
6338530 |
T |
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| Q |
201 |
cagaggacagaaacaaaaaatatagacaacaggagaataatct |
243 |
Q |
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| T |
6338531 |
cagaggacagaaacaaaaaatatagacaacaggagaagaatct |
6338573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 14192963 - 14193147
Alignment:
| Q |
5 |
aacaaaaatgagcagaataaatccccccaaagtaaggaaaaaagaagatttaaaagtataaaactatattaagacatgtttcaaagccacatttgaatgc |
104 |
Q |
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|||||||||||||| ||||| | ||||| || | |||||||| ||| ||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
14192963 |
aacaaaaatgagcaaaataaggctccccagagaatggaaaaaataaggtttaaaagtataaaactatattaagacatatttcaaagccgcatttgaataa |
14193062 |
T |
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| Q |
105 |
tgaagtttctctacacaattatcatatcaaa-aacttgtagt----ccaagtcactcagataa-cctacatgccagttttacaga |
183 |
Q |
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| T |
14193063 |
tgaagtctgagtacacatttatcatatcaaagaacttgtagtggaactaagccactcagataaccctacatgccattattacaga |
14193147 |
T |
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