View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9372_low_34 (Length: 247)
Name: NF9372_low_34
Description: NF9372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9372_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2621785 - 2622023
Alignment:
| Q |
1 |
cttatgctttcaacacacgtcctgttactcgacacccttgtcagaagccttttgtgttttacctttcaaaagcaaaattcaattctacaatacaacagac |
100 |
Q |
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| T |
2621785 |
cttatgctttcaacacacgtcctgttactcgacacccttgtcagaagccttttgtgttttacctttcaaaagcaaaattcaattctacaatacaacagac |
2621884 |
T |
|
| Q |
101 |
agtgagtgaatatgaaaaacatcgtgttcctcatccggaatgccgatggaaaatggctaatccttctgctcttgacaaagttgtcgtatataagaagcca |
200 |
Q |
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| T |
2621885 |
agtgagtgaatatgaaaaacatcgtgttcctcatccggaatgccgatggaaaatggctaatccttctgctcttgacaaagttgtcgtatataagaagcca |
2621984 |
T |
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| Q |
201 |
gacccgcatctatgggatagagtacgttcttcttctctg |
239 |
Q |
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| T |
2621985 |
gacccgcatctatgggatagagtacgttcttcttctctg |
2622023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 41316860 - 41316639
Alignment:
| Q |
3 |
tatgctttcaacacacgtcctgttactcgacacccttgtcagaagccttttgtgttttacctttcaaaagcaaaattcaattctacaatacaacagacag |
102 |
Q |
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||||| |||||||| ||||| |||| ||| | || ||||||||||||||||| |||||| | ||||| ||||||| |||| ||||| | |||| ||| |
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| T |
41316860 |
tatgcattcaacacgcgtccggttagccgaaatccatgtcagaagccttttgtattttacttctcaaaggcaaaatacaatgatacaacagaacaaacac |
41316761 |
T |
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| Q |
103 |
tgagtgaatatgaaaaacatcgtgttcctcatccggaatgccgatggaaaatggctaatccttctgctcttgacaaagttgtcgtatataagaagccaga |
202 |
Q |
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| T |
41316760 |
tgactgaatatgaaaggcatcgtgttcctcacccagaatgccggtggaagatggccaatccttcttctgttgacagagtggaggtatataagaagccaga |
41316661 |
T |
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| Q |
203 |
cccgcatctatgggatagagta |
224 |
Q |
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|| |||||||||||||||||| |
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| T |
41316660 |
tccacatctatgggatagagta |
41316639 |
T |
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