View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9372_low_39 (Length: 237)
Name: NF9372_low_39
Description: NF9372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9372_low_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2621711 - 2621490
Alignment:
| Q |
1 |
cccgcggaatatttgaacagcaaaaccccatgaaactgaaatagtccatctcttttctttgtcgtagcagatggattgttgaatgagtcctgctgagtcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2621711 |
cccgcggaatatttgaacagcaaaaccccatgaaactgaaatagtccatctcttttctttgtcgtagcagatggattgttgaatgagtcctgctgagtcg |
2621612 |
T |
|
| Q |
101 |
agcttcattggtattgtaagtcgttgaagtgcttctactcttgtggcattagggaagattggctcaaccacatcaagatggtgcagtgataccaatggag |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2621611 |
agcttcattggtattgtaaggcgttgaagtgcttctactcttgtggcattagggaagattggctcaaccacatcaagatggtgcagtgataccaatggag |
2621512 |
T |
|
| Q |
201 |
ttactggatgagctgcaagaag |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2621511 |
ttactggatgagctgcaagaag |
2621490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 41316940 - 41317157
Alignment:
| Q |
5 |
cggaatatttgaacagcaaaaccccatgaaactgaaatagtccatctcttttctttgtcgtagcagatggattgttgaatgagtcctgctgagtcgagct |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| |||||| |||| ||||||||||||||||||||| || ||||| ||||||||||| |||| |
|
|
| T |
41316940 |
cggaatatctgaacagcaaaaccccatgaaacagaaacagtccagtgctttgatttgtcgtagcagatggattgctgcatgagccctgctgagtcaagct |
41317039 |
T |
|
| Q |
105 |
tcattggtattgtaagtcgttgaagtgcttctactcttgtggcattagggaagattggctcaaccacatcaagatggtgcagtgataccaatggagttac |
204 |
Q |
| |
|
||||||||||||| | ||||| || |||||||| | || |||| |||||||||||||||||||| ||||| ||||||||||| || |||||||| || |
|
|
| T |
41317040 |
tcattggtattgtcaaccgttggagggcttctacgcgagtcacattggggaagattggctcaaccacgtcaaggtggtgcagtgacactaatggagtcac |
41317139 |
T |
|
| Q |
205 |
tggatgagctgcaagaag |
222 |
Q |
| |
|
||||| | ||||||||| |
|
|
| T |
41317140 |
cggatgcgatgcaagaag |
41317157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University