View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9372_low_4 (Length: 569)
Name: NF9372_low_4
Description: NF9372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9372_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 9 - 554
Target Start/End: Original strand, 37688262 - 37688802
Alignment:
| Q |
9 |
aatgcgacaaaaataacatcaatcttattacaaacttcaaacttaaaccgtagtttagacggttactcatgctcaatcacaaaattgtcataatattcat |
108 |
Q |
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| T |
37688262 |
aatgcgacaaaaataacatcaatcttattacaaacttcaaacttaaatcacagtttagaccgtta-----gctcaatcacaaaattgtcataatattcat |
37688356 |
T |
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| Q |
109 |
attccatcgatctgttaagaagtgcgtgcgtgcgtgcttggtacccagggtttttgtgttattccggcgcgagctcgagtgagaaaatgcaagctgcaat |
208 |
Q |
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| T |
37688357 |
attccatcgatctgttaagaagtgcgtgcgtgcgtacttggtacccagggtttttgtgttattccggcgcgagctcgagtgagaaaatgcaagctgcaat |
37688456 |
T |
|
| Q |
209 |
gaagcagaaactgaaactcctctacaattccaacttcaaatctctctttacactctcatcattcaaatttcattcttattcctctccgctaaactcatta |
308 |
Q |
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| T |
37688457 |
gaagcagaaactgaaactcctctacaattccaacttcaaatctctctttacactctcatcattcaaatttcattcttattcctctccgctaaactcatta |
37688556 |
T |
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| Q |
309 |
ccacattcttccaccgccaccaactccttcaccactccatggtccatcattcaacgacgtggaaacaaaatcgttggttctgatgtacgcatcgcatcac |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37688557 |
ccacattcttccaccgccaccaactccttcaccactccatggtccatcattcaacgacgtggaaacaaaatcgttggttctgatgtacgcatcgcatcac |
37688656 |
T |
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| Q |
409 |
cttcacctttcactgtttttaaatctttaccgattcttatacttttttacatttttcactgcagatcagagtcggaaaaaagatcggaaaacaaggttac |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37688657 |
cttcacctttcactgtttttaaatctttaccgattcttatacttttttacatttttcactgcagatcagagtcggaaaaaagatcggaaaacaaggttac |
37688756 |
T |
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| Q |
509 |
tttgctttttctattatcattcaattgaaatttcgtatttgattgt |
554 |
Q |
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| T |
37688757 |
tttgctttttctattatcattcaattgaaatttcgtatttgattgt |
37688802 |
T |
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