View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9372_low_8 (Length: 465)
Name: NF9372_low_8
Description: NF9372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9372_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 8 - 450
Target Start/End: Complemental strand, 44861774 - 44861313
Alignment:
| Q |
8 |
ttggtgttcaaatttttctccaatacattggatgcataatcttctgttggataaagtagattttgagcaagatttaaagagtagtcgacaatttccgctc |
107 |
Q |
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| T |
44861774 |
ttggtgttcaaatttttctccaatacattggatgcataatcttctgttggataaagtagattttgagcaagatttaaagagtagttgacaatttccgctc |
44861675 |
T |
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| Q |
108 |
ttctaaagagatgtctctgaatttgttatgnnnnnnnnnnn-atatatataacaaatagagacgaagtctagtaatttgttgttatgttaataacactaa |
206 |
Q |
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| T |
44861674 |
ttctaaagagatgtctctgaatttgttatgttttttttttttatatatataacaaagagagacgaagtctagtaatttgttgttatgttaataacactaa |
44861575 |
T |
|
| Q |
207 |
taatgtcgagtttataaggagacagatcaataagaat----------gtaataaagatggttaaattgttggttacttttcatgtttagtttttgataag |
296 |
Q |
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| T |
44861574 |
taatgtcgagtttataaggagacaaatcaataagaataactcatgatgtaataaagacggttaaattgttggttacttttcatgtttagtttttgataag |
44861475 |
T |
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| Q |
297 |
caagtttttatatttattgattgata--------tgattatactataggatcgttatgttgtgatgatcctggtggaagatgatacgagtgtacaaatta |
388 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44861474 |
caagtttttatatttattgattgatgacttgtgttgattatactataggatcgttatgttgtgatgatcctggtggaagatgatacgagtgtacaaatta |
44861375 |
T |
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| Q |
389 |
cacgctacactgataaaaaccggacaacaccaaaacccacattctctccgtcccttcttcct |
450 |
Q |
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| T |
44861374 |
cacgctacactgataaaaaccggacaacaccaaaacccacattctctccgtcccttcttcct |
44861313 |
T |
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