View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9373_2 (Length: 536)
Name: NF9373_2
Description: NF9373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9373_2 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 1e-67; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 227 - 413
Target Start/End: Complemental strand, 42025245 - 42025044
Alignment:
| Q |
227 |
tatttttattcttttgcagttgccatttttacagtttaatgctatattttatcaattcta--------------ttaagtggttgatgaagattaataaa |
312 |
Q |
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| T |
42025245 |
tatttttattcttttgtagttgccatttttacagtttaaagctatattttatcaattctaccttatcaattctattaagtggttgatgaagattaataaa |
42025146 |
T |
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| Q |
313 |
attgaaaagtttcagtacccttgtcgctcataatagcaagccatattaaat-aaatcttaggtgttactatatttcctctattctaaattaagtggtcct |
411 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42025145 |
attgaaaagttttagtacccttgtcgctcataatagcaagccgtattaaataaaatcttaggtgttactatatttcctctattctaaattaagtggtcct |
42025046 |
T |
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| Q |
412 |
tt |
413 |
Q |
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|| |
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| T |
42025045 |
tt |
42025044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 42025810 - 42025686
Alignment:
| Q |
8 |
agaaatgaaggtgagttaccttatttggtagctcatgtggaactatactctcagaatgaaagtattcacaatggatcaagttgatacttaggcagaggaa |
107 |
Q |
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| T |
42025810 |
agaaatgaaggtgagttaccttatttggtagctcatgtggaactatactctcagaataaaagtattcacaatggatcaagttgatacttaggcagaggaa |
42025711 |
T |
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| Q |
108 |
taggataaaaaatggggtgaatatg |
132 |
Q |
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| T |
42025710 |
taggataaaaaatagggtgaatatg |
42025686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 474 - 536
Target Start/End: Complemental strand, 42024985 - 42024923
Alignment:
| Q |
474 |
cttggattttttgtttctgtactagaagatctctttgaagatgacattctgtgatacgtgatg |
536 |
Q |
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| T |
42024985 |
cttggattttttgtttctgtgctagaagatctctttgaagatgacattctgtgatacgtgatg |
42024923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 42025633 - 42025591
Alignment:
| Q |
188 |
tgtggtgatagtgcaagtgtatgtgtgcatatatactagtatt |
230 |
Q |
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| T |
42025633 |
tgtggtgatagtgcaagtatatgtgtgcatatatactagtatt |
42025591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 1253019 - 1252895
Alignment:
| Q |
8 |
agaaatgaaggtgagttaccttatttggtagctcatgtggaactatactctcagaatgaaagtattcacaatggatcaagttgatacttaggcagaggaa |
107 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1253019 |
agaaatgaaggtgagttcccttatttggtagctcatgtggaactatattctcagaatgaaagtattcacaatggatcaagttgatacttaggcagaggaa |
1252920 |
T |
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| Q |
108 |
taggataaaaaatggggtgaatatg |
132 |
Q |
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||||||||||||||||||||||||| |
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| T |
1252919 |
taggataaaaaatggggtgaatatg |
1252895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 1252839 - 1252797
Alignment:
| Q |
188 |
tgtggtgatagtgcaagtgtatgtgtgcatatatactagtatt |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1252839 |
tgtggtgatagtgcaagtgtatgtgtgcatatatactagtatt |
1252797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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