View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9373_3 (Length: 532)
Name: NF9373_3
Description: NF9373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9373_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 25 - 532
Target Start/End: Complemental strand, 50552638 - 50552132
Alignment:
| Q |
25 |
ctgtgatagtaatagagtactaaatttctttatatccgtgtatcctctaggttgagttggttgaaccgcccagttctgcttgtgttggagaaagaattac |
124 |
Q |
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| T |
50552638 |
ctgtgatagtaatagagtactaaatttctttatttccgtgtatcctctaggttgagttggttgaaccgcccagttctgcttgtgttggagaaagaattac |
50552539 |
T |
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| Q |
125 |
tggtcgagtgagatgaagggaagcctgacgaactcttaaacccgaagaagaaaatttgggagacattgcaaacagagctgcacacaaatgaagagctagt |
224 |
Q |
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| T |
50552538 |
ttttccag-gacatgaagggaagcctgacgaactcttaaacccgaagaagaaaatttgggagacattgcaaacagagctgcacacaaatgaagagctagt |
50552440 |
T |
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| Q |
225 |
tgcatgctacaaaaatgttccacttaccacatcagctggtgtttgcaaggttttatccataactggatcaataaggtagatagagagaaagattgaaaga |
324 |
Q |
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| T |
50552439 |
tgcatgctacaaaaatgttccacttaccacatcagctggtgtttgcaaggttttatccataactggatcaataaggtagatagagagaaagattgaaaga |
50552340 |
T |
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| Q |
325 |
taaaagacagcatagtttatccccttatattctgactagcagatctggaagtttttcatattttcatgttgccataattgtagaatttacgttgagtaat |
424 |
Q |
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| T |
50552339 |
taaaagacagcatagtttatccccttatattctgactagcagatctggaagtttttcatattttcatgttgtcataattgtagaatttacgttgagtaat |
50552240 |
T |
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| Q |
425 |
ttaactgcgtattttagatgaactgttgcaatgtgccaacttgttaatataattgattatattttctttcttggataatctatannnnnnnctgtttaag |
524 |
Q |
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| T |
50552239 |
ttaactgcgtattttagatgaactgttgcaatgtgccaacttgttaatataattgattatattttctttcttggataatctatatttttttctgtttaag |
50552140 |
T |
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| Q |
525 |
gtatattg |
532 |
Q |
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| T |
50552139 |
gtatattg |
50552132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 72 - 276
Target Start/End: Complemental strand, 29763463 - 29763260
Alignment:
| Q |
72 |
taggttgagttggttgaaccgcccagttctgcttgtgttggagaaagaattactggtcgagtgagatgaagggaagcctgacgaactcttaaacccgaag |
171 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||||| || || | | ||||||| || || || |||||||| || || ||| |
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| T |
29763463 |
taggttgagttggttgaaccgcccagttccgctcttgttggagaaagaatcacat-tcccggggtatgaaggcaatccagatgaactcttgaatccaaag |
29763365 |
T |
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| Q |
172 |
aagaaaatttgggagacattgcaaacagagctgcacacaaatgaagagctagttgcatgctacaaaaatgttccacttaccacatcagctggtgtttgca |
271 |
Q |
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|||||| ||||||||||||||||| || |||||||| ||||| |||||| |||||||||||| | ||||| | |||||||||||||| |||||| |
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| T |
29763364 |
aagaaagtttgggagacattgcaagtcgatctgcacacgaatgagaagctagaggcatgctacaaagacattccattgaccacatcagctggcatttgca |
29763265 |
T |
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| Q |
272 |
aggtt |
276 |
Q |
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|||| |
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| T |
29763264 |
cggtt |
29763260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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