View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9373_4 (Length: 503)
Name: NF9373_4
Description: NF9373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9373_4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 202 - 503
Target Start/End: Original strand, 39551037 - 39551338
Alignment:
| Q |
202 |
tggtcaatatcaaccattcctttcttgatgacacacaagtggagcttatcaatgctttcattccaaacattataatgtaagtgcctaaattcctaaacta |
301 |
Q |
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| T |
39551037 |
tggtcaatatcaaccattcctttcttgatgacacacaagtggagcttatcaatgctttcattccaaacattataatgtaagtgcctaaattcctaaacta |
39551136 |
T |
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| Q |
302 |
tctctaatattgtactacatctttatcccctgacactacatatattaactagtactagtctttctgaccttggtgtaatatatcgctaggtatacctact |
401 |
Q |
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| T |
39551137 |
tctctaatattgtactacatctttatcccctgacactacatatattaactagtactagtctttctgaccttggtgtaatatatcgctaggtatacctact |
39551236 |
T |
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| Q |
402 |
tttttacaatgttaatttaataaatttttgtgtaacttctttaattttcgagtattaaaatgaataacaaaatgggaaacctccaaaagatgatgttccg |
501 |
Q |
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| T |
39551237 |
tttttacaatgttaatttaataaatttttgtgtaacttctttaattttcgagtattaaaatgaataacaaaatgggaaacctccaaaagatgatgttccg |
39551336 |
T |
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| Q |
502 |
gg |
503 |
Q |
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| T |
39551337 |
gg |
39551338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 39550847 - 39550969
Alignment:
| Q |
12 |
atgagattagctatgtcactgccaannnnnnnnngttgctatttatcaatgtttgggttatatacttgtattagataatatcacatgacattgataattc |
111 |
Q |
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| T |
39550847 |
atgagattagctatgtcactgccaatttttttttgttgctatttatcaatgtttgggttatatacttgtattagataatatcacatgacattgataattc |
39550946 |
T |
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| Q |
112 |
aagtgtgacatgtagcaatataa |
134 |
Q |
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| T |
39550947 |
aagtgtgacatgtagcaatataa |
39550969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 439 - 489
Target Start/End: Original strand, 39559782 - 39559832
Alignment:
| Q |
439 |
tctttaattttcgagtattaaaatgaataacaaaatgggaaacctccaaaa |
489 |
Q |
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| T |
39559782 |
tctttaaatttcgagtattaaaatgaatgacaaaatgggaaacctcgaaaa |
39559832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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