View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9373_6 (Length: 417)
Name: NF9373_6
Description: NF9373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9373_6 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 23 - 380
Target Start/End: Original strand, 951945 - 952298
Alignment:
| Q |
23 |
catcatcatgctaaattgtacatgatttgtccaacactcaatctatcctttgagattttatttttggtcgtacaaggttcaactgcggggaaaacagaca |
122 |
Q |
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| T |
951945 |
catcatcatgctaaattgtacatgatttgtccaacactcaatctatcctttgagattttattattggtcgtacaaggttcaactgcggggaaaacagaca |
952044 |
T |
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| Q |
123 |
aaccattgcaatccaaattaaactacattgnnnnnnntgtggcaaatgacatacgagaatcacgaacacaataaagctagagcagtaataaacaatttta |
222 |
Q |
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| T |
952045 |
aaccattgcaatccaaattaaactacattgaaaaaaatgtggcaaatggcatacgagaatcacgaacacaataaagctagagcagtaataaacaatttta |
952144 |
T |
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| Q |
223 |
atcgaaacaaatcttgatacataaatcttaaaaagaaattttaggaagtcaaggaaacaaatatgtagagataaaggttnnnnnnnttgatatataaact |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
952145 |
atcgaaacaaatcttgatacataaatcttaaaaagaaattttaggaagtcaaggaaacaaatatgtagagataaagcttaaaaaaattgatatataaact |
952244 |
T |
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| Q |
323 |
gaaaacataaaacaacttttatttaattttcatattgacttgcacctccttattttca |
380 |
Q |
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| T |
952245 |
gaaaacataaaacaact----tttaattttcatattgacctgcacctccttattttca |
952298 |
T |
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